Detailed information NTG1081328

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: UPTC16711_RS06370
• Genome accession: NZ_CP176595
• Coordinates: 1218877..1219791 (-)
• Length: 304 a.a.
• NCBI ID: WP_257936362.1
• Uniprot ID: -
• Organism: Campylobacter lari strain RM16711
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1213877..1224791

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
UPTC16711_RS06345 (UPTC16711_01259)	mgtE	1214213..1215556 (+)	1344	WP_039628803.1	magnesium transporter	-
UPTC16711_RS06350 (UPTC16711_01260)	tpx	1215570..1216088 (+)	519	WP_039618996.1	thiol peroxidase	-
UPTC16711_RS06355 (UPTC16711_01261)	-	1216085..1217470 (-)	1386	WP_257939280.1	replicative DNA helicase	-
UPTC16711_RS06360 (UPTC16711_01262)	cysK	1217483..1218385 (-)	903	WP_257936360.1	cysteine synthase A	-
UPTC16711_RS06365 (UPTC16711_01263)	-	1218482..1218784 (-)	303	WP_039619003.1	HU family DNA-binding protein	-
UPTC16711_RS06370 (UPTC16711_01264)	waaF	1218877..1219791 (-)	915	WP_257936362.1	lipopolysaccharide heptosyltransferase II	Regulator
UPTC16711_RS06375 (UPTC16711_01265)	-	1219844..1220659 (+)	816	WP_257936363.1	glycosyltransferase family 2 protein	-
UPTC16711_RS06380 (UPTC16711_01266)	-	1220647..1221390 (+)	744	WP_257936364.1	glycosyltransferase family 25 protein	-
UPTC16711_RS06385 (UPTC16711_01267)	-	1221380..1222051 (-)	672	WP_257936365.1	cytidylyltransferase domain-containing protein	-
UPTC16711_RS06390 (UPTC16711_01268)	neuC	1222048..1223163 (-)	1116	WP_257936366.1	UDP-N-acetylglucosamine 2-epimerase	-
UPTC16711_RS06395 (UPTC16711_01269)	neuB1	1223160..1224191 (-)	1032	WP_257936367.1	sialic acid synthase	-

Sequence

Protein

• Length: 304 a.a.
• Molecular weight: 34571.74 Da
• Isoelectric Point: 10.3076

>NTDB_id=1081328 UPTC16711_RS06370 WP_257936362.1 1218877..1219791(-) (waaF) [Campylobacter lari strain RM16711]
MNIFINLPTWLGDAVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKRFENAQILVENKKQRYKQILKAKKNLGKIDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALNFKATSNALKLPIKAKSTQKILGINPGAHFGSAKRW
EASYFARVAKEFSSTHQILIFGVESEREICDEIERFLLKEGIRAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAAY
GVKTVAVFGSTKFSQTSPWQENAKIAHLDLACMPCMQKVCPLKHHKCMKDLKPDVVINLAKTFF

Nucleotide

• Length: 915 bp

>NTDB_id=1081328 UPTC16711_RS06370 WP_257936362.1 1218877..1219791(-) (waaF) [Campylobacter lari strain RM16711]
ATGAATATTTTTATCAACCTTCCTACTTGGCTTGGAGATGCGGTGATGGCTAGTGCGGCTATTTATGCTATAAAAGAAAA
ATATCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGCACAGAGCTTTTTAAACGTTTTGAAAATGCTCAAATTT
TAGTAGAAAATAAAAAACAAAGATATAAACAAATTTTAAAAGCTAAAAAAAACCTTGGTAAAATTGATCTAGCTTTTTCA
TTTCGCTCAGCATTTTCAAGCAAGATTATTTTAAATCTAATCAAAGCAAAGAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACATCAAGTTTTAAAATACTTAAATTTCATAGAAAAAGCTTTAAATTTTAAAGCCACTTCAAATGCTTTAA
AACTCCCTATAAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAACCCAGGTGCACATTTTGGAAGTGCGAAAAGATGG
GAAGCGAGCTATTTTGCAAGGGTAGCAAAAGAATTTAGCTCCACTCATCAAATTTTAATCTTTGGAGTAGAAAGTGAGAG
AGAAATTTGTGATGAAATTGAGCGTTTTCTTTTAAAAGAAGGCATAAGGGCAAAAAATCTTTGTGGTAAAACCAGCATTT
ATACTTTATGTAAAAATATTTCTATGCTTGATTTACTCATCACAAATGATAGTGGTCCTATGCATATAGGTGCAGCTTAT
GGGGTAAAAACGGTGGCTGTTTTTGGCTCGACCAAATTCAGCCAAACATCACCTTGGCAAGAAAATGCTAAAATAGCTCA
TCTTGATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACACCACAAATGCATGAAAGACTTAAAGCCTG
ATGTGGTAATAAATTTAGCAAAAACATTTTTTTAA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (109-284)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	64.65	100	0.668