Detailed information
Bioinformatically predicted
Overview
| Name | ctsD | Type | Machinery gene |
| Locus tag | UPTC16711_RS01900 | Genome accession | NZ_CP176595 |
| Coordinates | 351469..352860 (+) | Length | 463 a.a. |
| NCBI ID | WP_214135007.1 | Uniprot ID | A0A5L4JSS9 |
| Organism | Campylobacter lari strain RM16711 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 346469..357860
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UPTC16711_RS01885 (UPTC16711_00376) | - | 346854..347498 (+) | 645 | WP_214135005.1 | HAD family hydrolase | - |
| UPTC16711_RS01890 (UPTC16711_00377) | nifJ | 347616..351170 (+) | 3555 | WP_115645147.1 | pyruvate:ferredoxin (flavodoxin) oxidoreductase | - |
| UPTC16711_RS01895 (UPTC16711_00378) | - | 351174..351497 (+) | 324 | WP_039617662.1 | hypothetical protein | - |
| UPTC16711_RS01900 (UPTC16711_00379) | ctsD | 351469..352860 (+) | 1392 | WP_214135007.1 | pilus (MSHA type) biogenesis protein MshL | Machinery gene |
| UPTC16711_RS01905 (UPTC16711_00380) | - | 352841..353170 (+) | 330 | WP_214118982.1 | hypothetical protein | - |
| UPTC16711_RS01910 (UPTC16711_00381) | - | 353163..354677 (+) | 1515 | WP_257936319.1 | GspE/PulE family protein | - |
| UPTC16711_RS01915 (UPTC16711_00382) | - | 354674..355834 (+) | 1161 | WP_257936318.1 | type II secretion system F family protein | - |
| UPTC16711_RS01920 (UPTC16711_00383) | - | 355831..356583 (-) | 753 | WP_257936317.1 | TSUP family transporter | - |
| UPTC16711_RS01925 (UPTC16711_00384) | - | 356568..357317 (-) | 750 | WP_257936316.1 | TIGR02757 family protein | - |
Sequence
Protein
Download Length: 463 a.a. Molecular weight: 52653.46 Da Isoelectric Point: 7.9433
>NTDB_id=1081318 UPTC16711_RS01900 WP_214135007.1 351469..352860(+) (ctsD) [Campylobacter lari strain RM16711]
MKKIIFLFISILTFTNVFASQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNYTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSTKEADNLVISTDKFDFWEKIS
EEIQALLDENTTKPIINTNAGIITLNATLYELTRVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNG
DDNDFIINKGGVRNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIRADKKVLSLKELGFEHEDDMF
MKKIIFLFISILTFTNVFASQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNYTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSTKEADNLVISTDKFDFWEKIS
EEIQALLDENTTKPIINTNAGIITLNATLYELTRVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNG
DDNDFIINKGGVRNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIRADKKVLSLKELGFEHEDDMF
Nucleotide
Download Length: 1392 bp
>NTDB_id=1081318 UPTC16711_RS01900 WP_214135007.1 351469..352860(+) (ctsD) [Campylobacter lari strain RM16711]
ATGAAAAAAATAATATTTTTATTTATTAGTATTTTAACTTTTACAAATGTTTTTGCCTCACAGTGTCATCAGCGCTTTTT
TGATATAAGTGTAGAAAATAAAACTTCTTTGATCGAAATTTTAAATGAACTTGGTAGAGAATGTGGTTTTAGTATTATAA
TAAAAGATTCATTAGCTAGAGAAAAGTTAAATTATACTCAAAATTATTTACACATAAGAAAGATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAGAATAATCTTGCTTATGAGTATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTGCACTATATAAGCTCTATTAGAGAAGGGCAAAGTATCACCAAAGCTTCAGTAGATTCAAGACCTAAAC
AAGGTGATTATGATAGTACTAAAGAAGCAGATAATCTAGTCATTAGCACGGATAAATTTGATTTTTGGGAAAAAATTTCA
GAAGAAATACAAGCTTTATTAGATGAAAATACAACTAAGCCTATTATTAATACTAATGCAGGAATTATCACTTTAAATGC
TACTTTATATGAGCTTACAAGAGTTGAAAAATATTTAAAAGATTTAAATAAAAGACTTAAAAAGCAAGTTTTAATTGATG
TAAGTATAGTTGCCGTACATTTAAATAAAAGTCATTCAAGTGGGATTAACTGGCAAGAGCTTGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATCAATAAAGGTGGTGTTAGAAATATCAATCTTAAAGCCAATGTTGAAACTAAAGCTATTTT
AAATTTATTACAAGAAAATGGCAAAACCACTGTGCTTTCTAACCCAAAACTCATGGCGCTTAATAATCAACAAGCTATTA
TTTCCATAGGTGATACGATTAATTATCAAGTAAAAGAAAGCTCTAAGGGTACTGAAAATGGTACGACCATTAGTGAAACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCTGAAATTTCAGATGATCACAAAATCATGCTTAG
AATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAATCACAGGCAAAATAAACCAAGAAATATAGCACCTGATA
CCATACAAAAAAAGCTTTCTACTGTAGTTGAAGTTGATGATGGGCAAACTTTAATTTTGGGTGGATTGATTAGTAAAAAT
ACGATTAGTAATCATAATGAAGTCAGTGCCTTATCTAAAATACCACTTTTTGGAGCTTTATTTCAAGGAAAGCAAAATTT
AGAAGATATTAGCGAAATAGTTTTTATCATCAAACCAAGTTTAATAAGAGCTGATAAAAAAGTGTTGAGTTTAAAAGAAT
TAGGTTTTGAACATGAAGATGATATGTTTTAA
ATGAAAAAAATAATATTTTTATTTATTAGTATTTTAACTTTTACAAATGTTTTTGCCTCACAGTGTCATCAGCGCTTTTT
TGATATAAGTGTAGAAAATAAAACTTCTTTGATCGAAATTTTAAATGAACTTGGTAGAGAATGTGGTTTTAGTATTATAA
TAAAAGATTCATTAGCTAGAGAAAAGTTAAATTATACTCAAAATTATTTACACATAAGAAAGATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAGAATAATCTTGCTTATGAGTATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTGCACTATATAAGCTCTATTAGAGAAGGGCAAAGTATCACCAAAGCTTCAGTAGATTCAAGACCTAAAC
AAGGTGATTATGATAGTACTAAAGAAGCAGATAATCTAGTCATTAGCACGGATAAATTTGATTTTTGGGAAAAAATTTCA
GAAGAAATACAAGCTTTATTAGATGAAAATACAACTAAGCCTATTATTAATACTAATGCAGGAATTATCACTTTAAATGC
TACTTTATATGAGCTTACAAGAGTTGAAAAATATTTAAAAGATTTAAATAAAAGACTTAAAAAGCAAGTTTTAATTGATG
TAAGTATAGTTGCCGTACATTTAAATAAAAGTCATTCAAGTGGGATTAACTGGCAAGAGCTTGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATCAATAAAGGTGGTGTTAGAAATATCAATCTTAAAGCCAATGTTGAAACTAAAGCTATTTT
AAATTTATTACAAGAAAATGGCAAAACCACTGTGCTTTCTAACCCAAAACTCATGGCGCTTAATAATCAACAAGCTATTA
TTTCCATAGGTGATACGATTAATTATCAAGTAAAAGAAAGCTCTAAGGGTACTGAAAATGGTACGACCATTAGTGAAACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCTGAAATTTCAGATGATCACAAAATCATGCTTAG
AATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAATCACAGGCAAAATAAACCAAGAAATATAGCACCTGATA
CCATACAAAAAAAGCTTTCTACTGTAGTTGAAGTTGATGATGGGCAAACTTTAATTTTGGGTGGATTGATTAGTAAAAAT
ACGATTAGTAATCATAATGAAGTCAGTGCCTTATCTAAAATACCACTTTTTGGAGCTTTATTTCAAGGAAAGCAAAATTT
AGAAGATATTAGCGAAATAGTTTTTATCATCAAACCAAGTTTAATAAGAGCTGATAAAAAAGTGTTGAGTTTAAAAGAAT
TAGGTTTTGAACATGAAGATGATATGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsD | Campylobacter jejuni subsp. jejuni 81-176 |
56.838 |
100 |
0.575 |