Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   UPTC16711_RS01545 Genome accession   NZ_CP176595
Coordinates   279617..280795 (+) Length   392 a.a.
NCBI ID   WP_257939168.1    Uniprot ID   -
Organism   Campylobacter lari strain RM16711     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 274617..285795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC16711_RS01535 (UPTC16711_00306) - 274952..277426 (+) 2475 WP_257939170.1 SIR2 family protein -
  UPTC16711_RS01540 (UPTC16711_00307) - 277635..279620 (+) 1986 WP_257939169.1 capsular polysaccharide biosynthesis protein -
  UPTC16711_RS01545 (UPTC16711_00308) kpsS 279617..280795 (+) 1179 WP_257939168.1 capsule biosynthesis protein Regulator
  UPTC16711_RS01550 (UPTC16711_00309) - 280792..282300 (-) 1509 WP_257939167.1 hypothetical protein -
  UPTC16711_RS01555 (UPTC16711_00310) - 282464..283594 (+) 1131 WP_257939166.1 DUF829 domain-containing protein -
  UPTC16711_RS01560 (UPTC16711_00311) - 283604..284971 (+) 1368 WP_257939165.1 cytochrome P450 -
  UPTC16711_RS01565 (UPTC16711_00312) - 284974..285327 (+) 354 WP_039627957.1 membrane protein -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 46373.91 Da        Isoelectric Point: 10.1408

>NTDB_id=1081317 UPTC16711_RS01545 WP_257939168.1 279617..280795(+) (kpsS) [Campylobacter lari strain RM16711]
MNLSKKLKKFSGKNVLLLQGPVGGFFRKIATKIPQAKVYKVNFNGGDFFFYPFKSINYTKSLADLEDFYKKLFEEKQIQV
IIMYNDCRKVHEIAISVAKQMGIEVWIFEEGYIRPNFITFEKDGVNANSTLPREKEFYLSQKKIDKDFKFKTFSSTFRNM
AFASFLYWFFAFLFSWYFNNSLHHRSLKLFDFLPWLCSVYRKNKYKITEKSLNEKILSLKQKYFLAILQVHNDTQLSHHY
KKTTEKFIEEVIISFANHAKAKSYLVFKHHPMDRGYRDYAKLIEDLSLKYNVEGRILYVHDLHLPTLLINTRGTIVINST
VGLSALYHNSPLKVMGKAFYDIEGLTYQKSLHTFWKECRAYKPDVVLHAKFRNYVIYKTQVNGNFFKNTSLD

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=1081317 UPTC16711_RS01545 WP_257939168.1 279617..280795(+) (kpsS) [Campylobacter lari strain RM16711]
ATGAATTTAAGTAAAAAGTTAAAAAAATTTTCTGGTAAAAATGTTTTATTACTCCAAGGTCCTGTGGGTGGATTTTTTCG
TAAAATTGCTACAAAAATTCCACAAGCTAAGGTTTATAAAGTAAATTTTAATGGTGGAGATTTTTTCTTTTATCCTTTTA
AAAGTATTAATTACACTAAAAGCTTGGCTGATCTTGAAGACTTTTATAAAAAGCTTTTTGAAGAAAAACAAATTCAAGTT
ATCATTATGTATAATGATTGTAGAAAAGTGCATGAAATAGCCATTAGCGTTGCTAAGCAAATGGGTATTGAAGTATGGAT
TTTTGAAGAAGGTTATATAAGACCAAACTTCATTACTTTTGAAAAAGATGGAGTGAATGCAAACTCGACCTTACCAAGAG
AAAAAGAATTTTATCTAAGTCAGAAAAAAATTGACAAAGATTTTAAATTTAAAACTTTCTCAAGTACTTTTAGAAATATG
GCCTTTGCTTCATTTTTATACTGGTTTTTTGCTTTTTTATTTTCTTGGTATTTTAATAATTCTTTACACCATAGAAGTTT
AAAATTATTTGACTTTTTACCTTGGCTTTGCTCAGTATATAGAAAAAACAAATACAAAATCACAGAAAAAAGTTTAAATG
AAAAAATTCTTTCCCTAAAACAAAAGTATTTTTTAGCTATTTTACAAGTGCATAATGACACTCAACTTTCTCATCATTAT
AAAAAAACTACAGAAAAATTTATAGAAGAGGTAATCATCTCTTTTGCTAATCATGCTAAAGCAAAGTCTTATCTAGTTTT
TAAACACCATCCCATGGACCGTGGCTATAGGGACTATGCTAAACTTATAGAAGATTTGAGTTTAAAATACAATGTCGAGG
GTAGAATTTTATATGTACATGATTTGCATTTACCTACGCTTTTAATCAATACAAGAGGCACTATAGTGATAAATAGCACA
GTAGGACTTTCTGCTTTATACCACAATAGCCCTTTAAAAGTTATGGGAAAAGCCTTTTATGATATAGAAGGCCTAACGTA
TCAAAAAAGCTTGCATACTTTTTGGAAAGAATGCAGAGCATATAAACCTGATGTGGTTTTACATGCTAAATTTAGAAATT
ATGTGATATATAAAACCCAAGTCAATGGGAATTTTTTCAAAAATACTAGTTTAGATTAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(80-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.519

100

0.62

Multiple sequence alignment