Detailed information NTG1081310

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: UPTC15744_RS06805
• Genome accession: NZ_CP176594
• Coordinates: 1321319..1322233 (-)
• Length: 304 a.a.
• NCBI ID: WP_257906398.1
• Uniprot ID: -
• Organism: Campylobacter lari strain RM15744
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1316319..1327233

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
UPTC15744_RS06780 (UPTC15744_01325)	mgtE	1316657..1318000 (+)	1344	WP_257906396.1	magnesium transporter	-
UPTC15744_RS06785 (UPTC15744_01326)	tpx	1318013..1318531 (+)	519	WP_257906397.1	thiol peroxidase	-
UPTC15744_RS06790 (UPTC15744_01327)	-	1318528..1319913 (-)	1386	WP_087699265.1	replicative DNA helicase	-
UPTC15744_RS06795 (UPTC15744_01328)	cysK	1319926..1320828 (-)	903	WP_087685407.1	cysteine synthase A	-
UPTC15744_RS06800 (UPTC15744_01329)	-	1320924..1321226 (-)	303	WP_039619003.1	HU family DNA-binding protein	-
UPTC15744_RS06805 (UPTC15744_01330)	waaF	1321319..1322233 (-)	915	WP_257906398.1	lipopolysaccharide heptosyltransferase II	Regulator
UPTC15744_RS06810 (UPTC15744_01331)	-	1322287..1323093 (+)	807	WP_257906399.1	glycosyltransferase family 2 protein	-
UPTC15744_RS06815 (UPTC15744_01332)	-	1323150..1323822 (+)	673	Protein_1323	glycosyltransferase family 25 protein	-
UPTC15744_RS06820 (UPTC15744_01333)	-	1323824..1324495 (-)	672	WP_257906400.1	cytidylyltransferase domain-containing protein	-
UPTC15744_RS06825 (UPTC15744_01334)	neuC	1324492..1325607 (-)	1116	WP_257906401.1	UDP-N-acetylglucosamine 2-epimerase	-
UPTC15744_RS06830 (UPTC15744_01335)	neuB1	1325604..1326635 (-)	1032	WP_052802910.1	sialic acid synthase	-

Sequence

Protein

• Length: 304 a.a.
• Molecular weight: 34683.92 Da
• Isoelectric Point: 10.3079

>NTDB_id=1081310 UPTC15744_RS06805 WP_257906398.1 1321319..1322233(-) (waaF) [Campylobacter lari strain RM15744]
MNIFINLPTWLGDAVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKHFENVQILVENKKQRYKQILKARKNLGKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALNFKATSNALKLPIKAKSTQKILGINPGAHFGSAKRW
EAIYFARVAKEFSSTHQILIFGVESEREICDEIERFLLKEGIKAKNLCSKTSIYTLCKNISMLDLLITNDSGPMHIGAAY
GVKTVAVFGSTKFSQTSPWQENAKIAHLNLACMPCMQKVCPLKHHKCMKDLKPEVVINLAKTFF

Nucleotide

• Length: 915 bp

>NTDB_id=1081310 UPTC15744_RS06805 WP_257906398.1 1321319..1322233(-) (waaF) [Campylobacter lari strain RM15744]
ATGAATATTTTTATCAACCTTCCTACTTGGCTTGGCGATGCGGTGATGGCTAGTGCGGCTATTTATGCTATAAAAGAAAA
ATATCCCCAAGCCAAATTTACTTTTTATGGTTCTTTTGTTAGCACAGAGCTTTTTAAACACTTTGAAAATGTGCAAATTT
TAGTAGAAAATAAAAAGCAAAGATATAAGCAAATTTTAAAAGCTAGAAAAAACCTTGGTAAATTTGATCTAGCTTTTTCG
TTTCGCTCAGCATTTTCAAGCAAGATCATTTTAAATCTAATCAAAGCAAAAAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACATCAAGTTTTAAAATACTTAAATTTCATAGAAAAAGCTTTAAATTTTAAAGCCACTTCAAATGCTTTAA
AACTCCCTATAAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAACCCAGGTGCACATTTTGGAAGTGCGAAAAGATGG
GAAGCAATCTATTTTGCAAGGGTAGCAAAAGAATTTAGCTCCACGCATCAAATTTTAATCTTTGGAGTAGAAAGTGAGAG
AGAAATTTGTGATGAAATTGAGCGTTTTCTTTTAAAAGAAGGCATAAAAGCAAAAAATCTTTGTAGTAAAACTAGTATTT
ATACTTTATGTAAAAATATTTCTATGCTTGACTTGCTCATCACAAACGATAGTGGTCCTATGCATATAGGCGCAGCTTAT
GGGGTAAAAACGGTGGCTGTTTTTGGCTCGACTAAATTTAGTCAAACCTCGCCTTGGCAAGAAAATGCTAAAATAGCACA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGTCCTTTAAAACACCACAAATGCATGAAAGACTTAAAGCCTG
AAGTAGTAATAAATTTAGCAAAAACATTTTTTTAA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (109-284)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	64.65	100	0.668