Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   UPTC15744_RS02010 Genome accession   NZ_CP176594
Coordinates   382320..383711 (+) Length   463 a.a.
NCBI ID   WP_257906092.1    Uniprot ID   -
Organism   Campylobacter lari strain RM15744     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 377320..388711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC15744_RS01995 (UPTC15744_00391) - 377705..378349 (+) 645 WP_257906094.1 HAD family hydrolase -
  UPTC15744_RS02000 (UPTC15744_00392) nifJ 378467..382021 (+) 3555 WP_257906093.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  UPTC15744_RS02005 (UPTC15744_00393) - 382025..382348 (+) 324 WP_039628027.1 hypothetical protein -
  UPTC15744_RS02010 (UPTC15744_00394) ctsD 382320..383711 (+) 1392 WP_257906092.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  UPTC15744_RS02015 (UPTC15744_00395) - 383692..384021 (+) 330 WP_214118982.1 hypothetical protein -
  UPTC15744_RS02020 - 384014..384487 (+) 474 WP_257906091.1 hypothetical protein -
  UPTC15744_RS02025 (UPTC15744_00397) - 384961..385590 (+) 630 WP_257906090.1 helix-turn-helix transcriptional regulator -
  UPTC15744_RS02030 (UPTC15744_00398) - 385651..385938 (+) 288 WP_257906089.1 ankyrin repeat domain-containing protein -
  UPTC15744_RS02035 (UPTC15744_00399) - 385975..386795 (-) 821 Protein_400 DNA adenine methylase -
  UPTC15744_RS02040 (UPTC15744_00400) - 386879..387367 (-) 489 WP_257906088.1 phage virion morphogenesis protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52655.48 Da        Isoelectric Point: 7.9611

>NTDB_id=1081299 UPTC15744_RS02010 WP_257906092.1 382320..383711(+) (ctsD) [Campylobacter lari strain RM15744]
MKKIIFLFISILTFTNVFASQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNHTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSTKEVDNLVISTDKFDFWEKIS
EEIQALLDENTTKPIINTNAGIITLNATLYELTRVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNG
DDNDFIINKGGVRNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIRADKKVLSLKELGFEHEDDMF

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=1081299 UPTC15744_RS02010 WP_257906092.1 382320..383711(+) (ctsD) [Campylobacter lari strain RM15744]
ATGAAAAAAATAATATTTTTATTTATTAGTATTTTAACTTTTACAAATGTTTTTGCCTCACAGTGTCATCAGCGCTTTTT
TGATATAAGTGTAGAAAATAAAACTTCTTTGATCGAAATTTTAAATGAACTTGGTAGAGAATGTGGTTTTAGTATTATAA
TAAAAGATTCATTAGCTAGAGAAAAGTTAAATCATACCCAAAATTATCTACACATAAGAAAAATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGCTTATGAGTATGAAAAAAACATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTGCATTATATAAGCTCTATTAGAGAAGGGCAAAGCATTACTAAAGCTTCAGTGGATTCAAGACCTAAAC
AAGGCGATTATGATAGTACTAAAGAAGTAGATAATCTAGTCATTAGCACAGATAAATTTGATTTTTGGGAAAAAATTTCA
GAAGAAATACAAGCTTTATTAGATGAAAATACAACTAAGCCTATTATTAATACTAATGCAGGAATTATCACTTTAAATGC
TACTTTATACGAGCTTACAAGAGTTGAAAAATATCTAAAAGATTTAAATAAAAGACTTAAAAAGCAAGTTTTAATTGATG
TAAGTATAGTTGCCGTACATTTAAATAAAAGTCATTCAAGTGGGATTAACTGGCAAGAGCTTGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATCAATAAAGGTGGTGTTAGAAATATCAATCTTAAAGCCAATGTTGAAACTAAAGCTATTTT
AAATTTATTACAAGAAAATGGCAAAACCACTGTGCTTTCTAATCCAAAACTCATGGCGCTTAATAATCAACAAGCTATTA
TTTCCATAGGTGATACGATTAATTATCAAGTAAAAGAAAGTTCCAAGGGTACTGAAAATGGTACGACCATTAGTGAAACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCTGAAATTTCAGATGATCACAAAATCATGCTTAG
AATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAACCATAGACAAAATAAACCAAGAAATATAGCACCTGATA
CCATACAAAAAAAGCTTTCTACTGTAGTTGAAGTTGATGATGGACAAACTTTAATTTTGGGCGGATTGATTAGTAAAAAT
ACGATTAGTAATCATAATGAAGTCAGTGCCTTATCTAAAATACCACTTTTTGGTGCTTTATTTCAAGGAAAGCAAAATTT
AGAAGATATTAGTGAAATAGTTTTTATCATCAAGCCAAGTTTAATAAGAGCTGATAAAAAAGTGTTGAGTTTGAAAGAAT
TAGGTTTTGAACATGAAGATGATATGTTTTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(269-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

56.838

100

0.575

Multiple sequence alignment