Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   UPTC15744_RS01620 Genome accession   NZ_CP176594
Coordinates   308860..310038 (+) Length   392 a.a.
NCBI ID   WP_257906133.1    Uniprot ID   -
Organism   Campylobacter lari strain RM15744     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 303860..315038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC15744_RS01610 (UPTC15744_00320) - 304189..306657 (+) 2469 WP_257906135.1 SIR2 family protein -
  UPTC15744_RS01615 (UPTC15744_00321) - 306878..308863 (+) 1986 WP_257906134.1 capsular polysaccharide biosynthesis protein -
  UPTC15744_RS01620 (UPTC15744_00322) kpsS 308860..310038 (+) 1179 WP_257906133.1 capsule biosynthesis protein Regulator
  UPTC15744_RS01625 (UPTC15744_00323) - 310035..311096 (-) 1062 WP_257906132.1 hypothetical protein -
  UPTC15744_RS01630 - 311134..311463 (-) 330 WP_257906131.1 SGNH/GDSL hydrolase family protein -
  UPTC15744_RS01635 (UPTC15744_00324) - 311707..312837 (+) 1131 WP_257906130.1 DUF829 domain-containing protein -
  UPTC15744_RS01640 (UPTC15744_00325) - 312847..314220 (+) 1374 WP_257906129.1 cytochrome P450 -
  UPTC15744_RS01645 (UPTC15744_00326) - 314217..314570 (+) 354 WP_257906128.1 hypothetical protein -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 46355.90 Da        Isoelectric Point: 10.1738

>NTDB_id=1081298 UPTC15744_RS01620 WP_257906133.1 308860..310038(+) (kpsS) [Campylobacter lari strain RM15744]
MNLSKKLKKFSGKNVLLLQGPVGGFFRKIATKIPQAKVYKVNFNGGDFFFYPFKSINYTKNLAELEDFYKKLFEEKQIQV
ILMYNDCRKVHEIAISVAKQMGIEVWIFEEGYIRPNFITFEKNGVNANSTLPREKEFYLSQKKFDKNFKFKTFSSAFRNM
AFASFLYWLFAFLFSWYFNNSLHHRSLKLFDFLPWLCSVYRKNKYKITEKSLNEKILSLKQKYFLAILQVHNDTQLSHHY
KKTTEKFIEEVIISFANHAKAKSYLVFKHHPMDRGYRDYTKLIEDLSLKYNVEGRILYVHDLHLPTLLINARGTIVINST
VGLSALYHNSPLKVMGKAFYDIEGLTYQKSLHTFWKECRAYKPDVVLHAKFRNYVIYKTQANGDFFKNTSLD

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=1081298 UPTC15744_RS01620 WP_257906133.1 308860..310038(+) (kpsS) [Campylobacter lari strain RM15744]
ATGAATTTAAGTAAGAAGTTAAAAAAATTTTCTGGTAAAAATGTTTTATTGCTTCAGGGGCCTGTGGGTGGATTTTTTCG
TAAAATTGCTACAAAAATCCCGCAAGCTAAGGTTTATAAAGTAAATTTTAATGGAGGGGATTTTTTCTTTTATCCTTTTA
AAAGCATTAATTACACTAAAAACTTAGCCGAGCTTGAAGACTTTTATAAAAAGCTTTTTGAAGAAAAACAAATTCAAGTT
ATCTTGATGTATAATGATTGTAGAAAAGTACATGAAATCGCCATTAGTGTTGCTAAACAAATGGGTATTGAAGTATGGAT
TTTTGAAGAAGGTTATATAAGGCCAAACTTCATTACTTTTGAAAAAAATGGAGTGAATGCAAACTCAACTCTACCAAGAG
AAAAAGAATTTTATCTAAGTCAGAAAAAATTTGATAAAAATTTTAAATTTAAAACTTTCTCAAGTGCTTTTAGAAATATG
GCCTTTGCTTCGTTTTTATACTGGCTTTTTGCTTTTTTATTTTCTTGGTATTTTAATAATTCTTTACACCATAGAAGTTT
AAAATTATTTGACTTTTTACCTTGGCTTTGTTCGGTATATAGAAAAAATAAATACAAAATCACAGAAAAAAGTTTAAATG
AAAAAATTCTTTCCCTAAAACAAAAGTATTTTTTAGCTATTTTACAAGTGCACAATGATACTCAACTCTCCCATCATTAT
AAAAAAACTACAGAAAAATTTATAGAAGAAGTGATCATCTCTTTTGCCAATCATGCCAAAGCAAAGTCTTATTTAGTTTT
TAAGCATCATCCTATGGATCGTGGCTATAGGGACTATACTAAACTTATAGAAGATTTGAGTTTAAAATACAATGTCGAGG
GTAGAATTTTATATGTACATGATTTACATTTACCTACGCTCTTAATCAATGCAAGAGGCACTATAGTCATAAATAGCACA
GTAGGACTTTCTGCTTTATATCACAATAGCCCTTTAAAAGTTATGGGAAAAGCCTTTTATGATATAGAAGGCCTAACGTA
TCAAAAAAGCTTGCATACTTTTTGGAAAGAATGCAGAGCATATAAACCAGATGTGGTTTTACATGCTAAATTTAGAAATT
ATGTGATATATAAAACCCAAGCTAATGGGGATTTTTTCAAAAATACTAGTTTAGATTAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(80-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.772

100

0.622

Multiple sequence alignment