Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   UPTC15624_RS06185 Genome accession   NZ_CP176593
Coordinates   1185547..1186467 (-) Length   306 a.a.
NCBI ID   WP_410689470.1    Uniprot ID   -
Organism   Campylobacter lari strain RM15624     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1180547..1191467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC15624_RS06165 (UPTC15624_01219) cysK 1181516..1182418 (-) 903 WP_039628807.1 cysteine synthase A -
  UPTC15624_RS06170 (UPTC15624_01220) - 1182515..1182817 (-) 303 WP_039619003.1 HU family DNA-binding protein -
  UPTC15624_RS06175 (UPTC15624_01221) - 1182896..1184032 (-) 1137 WP_257942823.1 hypothetical protein -
  UPTC15624_RS06180 (UPTC15624_01222) - 1184041..1185546 (-) 1506 WP_410689469.1 MBOAT family O-acyltransferase -
  UPTC15624_RS06185 (UPTC15624_01223) waaF 1185547..1186467 (-) 921 WP_410689470.1 lipopolysaccharide heptosyltransferase II Regulator
  UPTC15624_RS06190 (UPTC15624_01224) - 1186481..1187593 (-) 1113 WP_257928031.1 hypothetical protein -
  UPTC15624_RS06195 (UPTC15624_01225) - 1187602..1189104 (-) 1503 WP_410689471.1 MBOAT family O-acyltransferase -
  UPTC15624_RS06200 (UPTC15624_01226) - 1189162..1189974 (+) 813 WP_257942860.1 glycosyltransferase family 2 protein -
  UPTC15624_RS06205 (UPTC15624_01227) rfbA 1189992..1190867 (+) 876 WP_039619036.1 glucose-1-phosphate thymidylyltransferase RfbA -

Sequence

Protein


Download         Length: 306 a.a.        Molecular weight: 34835.90 Da        Isoelectric Point: 10.2942

>NTDB_id=1081291 UPTC15624_RS06185 WP_410689470.1 1185547..1186467(-) (waaF) [Campylobacter lari strain RM15624]
MNIFINLPTWLGDAVMASVAIYAIKEKYPQAKFTFYGSFVSTELFKRFENAQILVENKKQRYRQILQARKNLGKFDLAFS
FRSAFSSKIVLNLIKTKKRFYFDKNILKEEHQVLKYLNFIEKALNFKATSNALKLPIKAKSTQKILGINPGAHFGSAKRW
EANYFARVAKEFSSTHQILIFGVESEREICDEIEHFLLKEGIKAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAAY
GVKTVAVFGSTKFSQTSPWQENAKIAHLNLACMPCMQKVCPLKHHKCMKDLKPEVVINLARNFSGV

Nucleotide


Download         Length: 921 bp        

>NTDB_id=1081291 UPTC15624_RS06185 WP_410689470.1 1185547..1186467(-) (waaF) [Campylobacter lari strain RM15624]
ATGAATATTTTTATCAATCTTCCTACTTGGCTTGGCGATGCAGTAATGGCTAGTGTGGCTATTTATGCTATAAAAGAAAA
ATACCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGTACAGAGCTTTTTAAACGCTTTGAAAATGCTCAAATTT
TAGTAGAAAATAAAAAGCAAAGATATAGGCAGATTTTACAAGCTAGAAAAAATCTTGGTAAATTTGATCTAGCTTTTTCA
TTTCGCTCGGCATTTTCAAGTAAGATTGTTTTAAATCTAATCAAAACAAAGAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACATCAAGTTTTAAAATACTTAAATTTCATAGAAAAAGCTTTAAATTTTAAAGCCACTTCAAATGCTTTAA
AACTCCCTATAAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAACCCAGGTGCACATTTTGGAAGTGCGAAAAGATGG
GAAGCGAACTATTTTGCAAGGGTAGCAAAAGAATTTAGCTCCACGCATCAAATTTTAATCTTTGGAGTAGAAAGCGAGAG
AGAAATTTGTGATGAAATTGAGCATTTTCTTTTAAAAGAAGGCATAAAAGCAAAAAATCTTTGTGGTAAAACTAGCATTT
ATACTTTATGCAAAAATATTTCTATGCTTGACTTGCTCATCACAAACGATAGTGGTCCTATGCATATAGGCGCAGCTTAT
GGGGTAAAAACGGTGGCTGTTTTTGGTTCTACTAAATTTAGTCAAACCTCGCCTTGGCAAGAAAATGCTAAAATAGCACA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACACCACAAATGCATGAAAGATTTAAAGCCTG
AAGTGGTAATAAATTTAGCAAGAAATTTTTCAGGAGTATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(109-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.537

100

0.66

Multiple sequence alignment