Detailed information NTG1081281

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: UPTC15624_RS01890
• Genome accession: NZ_CP176593
• Coordinates: 352093..353484 (+)
• Length: 463 a.a.
• NCBI ID: WP_039617665.1
• Uniprot ID: -
• Organism: Campylobacter lari strain RM15624
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 347093..358484

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
UPTC15624_RS01880 (UPTC15624_00375)	-	347478..348122 (+)	645	WP_257942619.1	HAD family hydrolase	-
UPTC15624_RS01885 (UPTC15624_00376)	nifJ	348240..351794 (+)	3555	WP_039628025.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
UPTC15624_RS01890 (UPTC15624_00377)	ctsD	352093..353484 (+)	1392	WP_039617665.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
UPTC15624_RS01895 (UPTC15624_00378)	-	353465..353794 (+)	330	WP_052241327.1	transformation system, membrane protein CtsX	-
UPTC15624_RS01900 (UPTC15624_00379)	-	353787..355301 (+)	1515	WP_052243362.1	transformation system, type II secretion system ATPase CtsE	-
UPTC15624_RS01905 (UPTC15624_00380)	-	355298..356458 (+)	1161	WP_257942618.1	type II secretion system F family protein	-
UPTC15624_RS01910 (UPTC15624_00381)	-	356455..357207 (-)	753	WP_039617669.1	TSUP family transporter	-
UPTC15624_RS01915 (UPTC15624_00382)	-	357192..357941 (-)	750	WP_039628031.1	TIGR02757 family protein	-

Sequence

Protein

• Length: 463 a.a.
• Molecular weight: 52627.43 Da
• Isoelectric Point: 7.9611

>NTDB_id=1081281 UPTC15624_RS01890 WP_039617665.1 352093..353484(+) (ctsD) [Campylobacter lari strain RM15624]
MKKIIFLFISILTFTNVFASQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNHTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSTKEADNLVISTDKFDFWEKIS
EEIQALLDENTTKPIINTNAGIITLNATLYELTRVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNG
DDNDFIINKGGVRNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIRADKKVLSLKELGFEHEDDMF

Nucleotide

• Length: 1392 bp

>NTDB_id=1081281 UPTC15624_RS01890 WP_039617665.1 352093..353484(+) (ctsD) [Campylobacter lari strain RM15624]
ATGAAAAAAATAATATTTTTATTTATTAGTATTTTAACTTTTACAAATGTTTTTGCCTCACAGTGCCATCAGCGCTTTTT
TGATATAAGTGTAGAAAATAAAACTTCTTTGATCGAAATTTTAAATGAACTTGGTAGAGAATGTGGTTTTAGCATTATAA
TAAAAGATTCATTAGCCAGAGAAAAGTTAAATCATACCCAAAATTATCTACACATAAGAAAAATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGCTTATGAGTATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTGCATTATATAAGCTCTATTAGAGAAGGGCAAAGTATCACCAAAGCTTCGGTGGATTCAAGACCTAAAC
AAGGTGATTATGATAGTACTAAAGAAGCAGATAATCTAGTTATTAGCACGGATAAATTTGATTTTTGGGAAAAAATTTCA
GAAGAAATACAAGCTTTACTAGATGAAAATACAACTAAGCCTATTATTAATACTAATGCAGGGATTATCACTTTAAATGC
TACTTTATATGAGCTTACAAGAGTTGAAAAATATCTAAAAGATTTAAATAAAAGACTTAAAAAGCAAGTTTTAATTGATG
TAAGTATAGTTGCCGTACATTTAAATAAAAGTCATTCAAGTGGGATTAACTGGCAAGAGCTTGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATCAATAAAGGCGGTGTTAGAAATATCAATCTTAAAGCCAATGTTGAAACTAAAGCTATTTT
AAATTTATTACAAGAAAATGGCAAAACCACTGTGCTTTCTAACCCAAAACTTATGGCACTTAATAATCAACAAGCTATTA
TTTCCATAGGTGATACGATTAATTATCAAGTAAAAGAAAGTTCCAAGGGTACTGAAAATGGTACGACCATTAGTGAGACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCTGAAATTTCAGATGATCATAAAATCATGCTTAG
AATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAATCATAGACAAAATAAACCAAGAAATATAGCGCCAGATA
CCATACAAAAAAAGCTTTCTACTGTAGTTGAAGTTGATGATGGGCAAACTTTAATTTTGGGTGGATTAATTAGTAAAAAT
ACGATTAGTAATCATAATGAAGTAAGTGCTTTATCTAAGATACCACTTTTTGGAGCTTTATTTCAAGGAAAGCAAAATTT
AGAAGATATTAGCGAAATAGTTTTTATCATCAAGCCAAGTTTAATAAGAGCTGATAAAAAAGTATTAAGCTTAAAAGAAT
TAGGTTTTGAACATGAAGATGATATGTTTTAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (269-443)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	56.838	100	0.575