Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   UPTC15622_RS06865 Genome accession   NZ_CP176592
Coordinates   1329456..1330370 (-) Length   304 a.a.
NCBI ID   WP_214099187.1    Uniprot ID   -
Organism   Campylobacter lari strain RM15622     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1324456..1335370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC15622_RS06840 (UPTC15622_01350) mgtE 1324793..1326136 (+) 1344 WP_257913042.1 magnesium transporter -
  UPTC15622_RS06845 (UPTC15622_01351) tpx 1326149..1326667 (+) 519 WP_257913041.1 thiol peroxidase -
  UPTC15622_RS06850 (UPTC15622_01352) - 1326664..1328049 (-) 1386 WP_257913040.1 replicative DNA helicase -
  UPTC15622_RS06855 (UPTC15622_01353) cysK 1328062..1328964 (-) 903 WP_257913038.1 cysteine synthase A -
  UPTC15622_RS06860 (UPTC15622_01354) - 1329061..1329363 (-) 303 WP_039619003.1 HU family DNA-binding protein -
  UPTC15622_RS06865 (UPTC15622_01355) waaF 1329456..1330370 (-) 915 WP_214099187.1 lipopolysaccharide heptosyltransferase II Regulator
  UPTC15622_RS06870 (UPTC15622_01356) - 1330423..1331262 (+) 840 WP_410689324.1 glycosyltransferase family 2 protein -
  UPTC15622_RS06875 (UPTC15622_01357) - 1331235..1332305 (+) 1071 WP_410689325.1 polysaccharide pyruvyl transferase family protein -
  UPTC15622_RS06880 (UPTC15622_01358) - 1332527..1333435 (+) 909 WP_410689326.1 glycosyltransferase family 2 protein -
  UPTC15622_RS06885 (UPTC15622_01359) yibB 1333430..1334368 (-) 939 WP_257912615.1 protein YibB -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 34620.76 Da        Isoelectric Point: 10.2615

>NTDB_id=1081273 UPTC15622_RS06865 WP_214099187.1 1329456..1330370(-) (waaF) [Campylobacter lari strain RM15622]
MNIFINLPTWLGDAVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKHFENAQILVENKKQRYKQILKARKNLSKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALNFKVTSNALKLPIKAKSTQKILGINPGAHFGSAKRW
EASYFARVAKEFSSTHQILIFGVESEREICDEIEHFLLKEGIKAKNLCGKTSIYTLCKNISILDLLITNDSGPMHIGAAY
GVKTVAVFGSTKFSQTSPWQENAKIAHLNLACMPCMQKVCPLKHHKCMKDLKPEVVINLAKTFF

Nucleotide


Download         Length: 915 bp        

>NTDB_id=1081273 UPTC15622_RS06865 WP_214099187.1 1329456..1330370(-) (waaF) [Campylobacter lari strain RM15622]
ATGAATATTTTTATCAACCTTCCTACTTGGCTTGGCGATGCGGTGATGGCTAGTGCGGCTATTTATGCTATAAAAGAAAA
ATATCCCCAAGCCAAATTTACTTTTTATGGTTCTTTTGTTAGCACAGAGCTTTTTAAACACTTTGAAAATGCTCAAATTT
TAGTAGAAAATAAAAAGCAAAGATATAAGCAAATTTTAAAAGCTAGAAAAAACCTTAGTAAATTTGATTTAGCTTTTTCA
TTTCGCTCAGCATTTTCAAGCAAGATCATTTTAAATCTAATCAAAGCAAAAAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACATCAAGTCTTAAAATACTTAAATTTTATAGAAAAAGCCTTAAATTTTAAAGTCACTTCAAATGCTTTAA
AACTCCCTATAAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAACCCAGGTGCGCATTTTGGAAGTGCCAAAAGATGG
GAAGCGAGCTATTTTGCAAGGGTAGCAAAAGAATTTAGCTCCACGCATCAAATTTTAATCTTTGGAGTAGAAAGCGAGAG
AGAAATTTGTGATGAAATTGAACATTTTCTTTTAAAAGAAGGCATAAAAGCAAAAAATCTTTGTGGTAAAACCAGCATTT
ATACTTTATGTAAAAATATTTCTATACTTGATTTACTCATCACAAACGATAGTGGTCCTATGCACATAGGTGCAGCTTAT
GGGGTGAAAACGGTGGCTGTTTTTGGCTCTACTAAATTTAGTCAAACCTCTCCTTGGCAAGAAAATGCTAAAATAGCACA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACACCACAAATGCATGAAAGACTTAAAGCCTG
AAGTAGTAATAAATTTAGCAAAAACATTTTTTTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(110-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.331

100

0.664

Multiple sequence alignment