Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   AACH87_RS19845 Genome accession   NZ_AP029019
Coordinates   4427753..4429378 (-) Length   541 a.a.
NCBI ID   WP_338796292.1    Uniprot ID   -
Organism   Acidovorax sp. DW039     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4422753..4434378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH87_RS19830 (ACDW_39110) - 4423873..4424331 (-) 459 WP_338796289.1 putative toxin-antitoxin system toxin component, PIN family -
  AACH87_RS19835 (ACDW_39120) - 4424321..4425613 (-) 1293 WP_338796290.1 THUMP domain-containing protein -
  AACH87_RS19840 (ACDW_39130) - 4425804..4427651 (+) 1848 WP_338796291.1 methyl-accepting chemotaxis protein -
  AACH87_RS19845 (ACDW_39140) rpoN/rpoN1 4427753..4429378 (-) 1626 WP_338796292.1 RNA polymerase factor sigma-54 Machinery gene
  AACH87_RS19850 (ACDW_39150) lptB 4429491..4430258 (-) 768 WP_338796293.1 LPS export ABC transporter ATP-binding protein -
  AACH87_RS19855 (ACDW_39160) lptA 4430270..4430926 (-) 657 WP_338796295.1 lipopolysaccharide transport periplasmic protein LptA -
  AACH87_RS19860 (ACDW_39170) - 4431028..4431684 (-) 657 WP_338796296.1 thiol:disulfide interchange protein DsbA/DsbL -
  AACH87_RS19865 (ACDW_39180) - 4431781..4432461 (-) 681 WP_338796297.1 SPOR domain-containing protein -
  AACH87_RS19870 (ACDW_39190) argS 4432473..4434182 (-) 1710 WP_338796299.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 59059.20 Da        Isoelectric Point: 4.6402

>NTDB_id=108127 AACH87_RS19845 WP_338796292.1 4427753..4429378(-) (rpoN/rpoN1) [Acidovorax sp. DW039]
MKPGLSLRVSQHLALTPQLQQSIRLLQLSTLELGQEVEQMLDENPFLERNTDEAPREEFGLEQADAPPQADDYSADDAIY
SGAASASSTGAEATLDTGSESAPDADYASSGAEEPDWGGDGSVDMAPNDSEWGGDAPARTRNDTEGDEADATELARSQES
LTAYLHRQALALRLSEVDSAALRFLIESLNDDGYLEESLEELAITLAGPDDLEQIEELVHRFTVGLRLLQTLEPVGVGAR
NLAECLTLQLSALAANGVSDVPEPVIQTALRICQQPLEMLARRDIKRLTQACSEGGSAGEERTRAAMALIARLEPRPGRR
FTDVERNIIIPDVIVRKAGRANGNSGQHNFIVSLNPDVMPRLRVHDVYAGALRGHKGGEGHQGLQQRLQEARWFIKNIQQ
RFDTILRVSRAIVERQKNFFTHGELAMRPLVLRDIADELGLHESTISRVTTAKYMATPIGTYELKYFFGSGLGTETGGNA
SSTAVRALIKQFVSAENPAKPLSDSQLAEMLKEQGIECARRTVAKYREALKIAPANLRKAL

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=108127 AACH87_RS19845 WP_338796292.1 4427753..4429378(-) (rpoN/rpoN1) [Acidovorax sp. DW039]
TTGAAGCCCGGCCTGTCACTGCGTGTCTCGCAGCATCTGGCGCTGACGCCGCAACTGCAGCAGTCCATCCGCCTGCTGCA
GCTGTCCACGCTGGAGCTGGGGCAGGAAGTCGAGCAGATGCTCGACGAGAACCCCTTCCTTGAACGCAATACCGACGAGG
CTCCGCGTGAGGAGTTTGGCCTGGAGCAGGCCGATGCGCCGCCCCAGGCGGATGACTACAGCGCGGATGATGCTATTTAT
TCAGGAGCTGCCAGCGCTTCATCCACAGGCGCCGAAGCCACTTTGGATACGGGTTCTGAGTCCGCGCCAGACGCCGACTA
CGCCAGCAGCGGTGCCGAAGAGCCCGACTGGGGCGGAGACGGCTCGGTGGACATGGCCCCCAACGACAGCGAGTGGGGTG
GAGACGCCCCCGCGCGCACCCGCAACGACACCGAAGGGGATGAGGCCGACGCGACCGAGCTGGCGCGCTCTCAGGAATCC
CTCACGGCCTATCTCCACCGCCAGGCGCTGGCGCTGCGCCTGTCTGAGGTGGACAGTGCTGCATTGCGCTTCCTCATCGA
ATCGCTGAACGACGACGGCTACCTGGAAGAGTCTCTGGAAGAGCTTGCCATCACCCTGGCTGGTCCGGATGACCTGGAGC
AGATCGAAGAGCTGGTGCACCGCTTTACCGTGGGGCTGCGTCTGCTGCAGACACTGGAGCCGGTGGGCGTCGGGGCGCGC
AATCTGGCGGAATGCCTGACCTTGCAGCTGAGCGCGCTGGCAGCAAATGGTGTCAGCGATGTGCCCGAGCCTGTCATCCA
GACGGCGCTGCGCATTTGCCAGCAGCCTCTGGAGATGCTGGCCCGCCGCGACATCAAGCGCCTCACCCAGGCCTGCAGCG
AGGGCGGAAGCGCTGGCGAGGAGCGGACCCGTGCCGCCATGGCGCTCATCGCCCGCCTGGAGCCGCGCCCGGGCCGCCGC
TTCACGGACGTGGAGCGCAACATCATCATTCCCGATGTCATCGTGCGCAAGGCGGGGCGTGCCAACGGCAACAGTGGCCA
GCACAACTTCATCGTCAGCCTCAACCCCGACGTCATGCCGCGCCTGCGCGTGCACGATGTGTATGCGGGGGCTCTGCGGG
GCCACAAGGGGGGCGAGGGTCACCAGGGGCTGCAGCAGCGCCTGCAAGAGGCGCGCTGGTTCATCAAGAACATCCAGCAG
CGCTTTGACACCATCTTGCGCGTCTCGCGTGCCATCGTCGAGCGGCAGAAGAACTTCTTCACCCACGGTGAGCTGGCCAT
GCGCCCGCTGGTGCTGCGTGACATTGCGGACGAACTGGGGCTGCACGAATCCACCATCAGCCGCGTGACCACGGCCAAAT
ACATGGCGACCCCGATTGGCACCTACGAGCTGAAGTACTTCTTTGGTTCAGGCCTGGGCACCGAGACCGGAGGCAACGCA
TCCAGCACGGCGGTGCGCGCGCTCATCAAGCAGTTTGTCTCGGCAGAGAATCCCGCCAAACCGCTGTCAGACAGCCAACT
GGCCGAGATGCTCAAGGAGCAGGGCATCGAGTGCGCACGCCGCACGGTGGCCAAGTACCGCGAGGCGCTCAAGATCGCGC
CTGCCAATTTGCGCAAGGCGCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(152-368)

Sigma-54, DNA binding domain (Sigma54_DBD)

(383-539)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.661

100

0.518

Multiple sequence alignment