Detailed information
Bioinformatically predicted
Overview
| Name | ctsD | Type | Machinery gene |
| Locus tag | UPTC15622_RS01965 | Genome accession | NZ_CP176592 |
| Coordinates | 367426..368817 (+) | Length | 463 a.a. |
| NCBI ID | WP_087685207.1 | Uniprot ID | A0A698GA44 |
| Organism | Campylobacter lari strain RM15622 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 362426..373817
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UPTC15622_RS01950 (UPTC15622_00386) | - | 362811..363455 (+) | 645 | WP_257910918.1 | HAD family hydrolase | - |
| UPTC15622_RS01955 (UPTC15622_00387) | nifJ | 363573..367127 (+) | 3555 | WP_410689341.1 | pyruvate:ferredoxin (flavodoxin) oxidoreductase | - |
| UPTC15622_RS01960 (UPTC15622_00388) | - | 367194..367454 (+) | 261 | WP_126340701.1 | hypothetical protein | - |
| UPTC15622_RS01965 (UPTC15622_00389) | ctsD | 367426..368817 (+) | 1392 | WP_087685207.1 | pilus (MSHA type) biogenesis protein MshL | Machinery gene |
| UPTC15622_RS01970 (UPTC15622_00390) | - | 368798..369127 (+) | 330 | WP_052243245.1 | transformation system, membrane protein CtsX | - |
| UPTC15622_RS01975 (UPTC15622_00391) | - | 369120..370634 (+) | 1515 | WP_257912866.1 | GspE/PulE family protein | - |
| UPTC15622_RS01980 (UPTC15622_00392) | - | 370631..371791 (+) | 1161 | WP_257912867.1 | type II secretion system F family protein | - |
| UPTC15622_RS01985 (UPTC15622_00393) | - | 371788..372540 (-) | 753 | WP_214097729.1 | TSUP family transporter | - |
| UPTC15622_RS01990 (UPTC15622_00394) | - | 372525..373274 (-) | 750 | WP_087685211.1 | TIGR02757 family protein | - |
Sequence
Protein
Download Length: 463 a.a. Molecular weight: 52569.39 Da Isoelectric Point: 7.9605
>NTDB_id=1081263 UPTC15622_RS01965 WP_087685207.1 367426..368817(+) (ctsD) [Campylobacter lari strain RM15622]
MKKIIFLFISVLTFTNVFASQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNHTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSTKEADNLVISTDKFDFWEKIS
EEIQALLDENTTKPIINTNAGIITLNATLYELTRVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNG
DDNDFIINKGGARNINLKANVETKAILNLLQENGKTIVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIKADKKVLSLKELGFEHEDDMF
MKKIIFLFISVLTFTNVFASQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNHTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSTKEADNLVISTDKFDFWEKIS
EEIQALLDENTTKPIINTNAGIITLNATLYELTRVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNG
DDNDFIINKGGARNINLKANVETKAILNLLQENGKTIVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIKADKKVLSLKELGFEHEDDMF
Nucleotide
Download Length: 1392 bp
>NTDB_id=1081263 UPTC15622_RS01965 WP_087685207.1 367426..368817(+) (ctsD) [Campylobacter lari strain RM15622]
ATGAAAAAAATAATATTTTTATTTATTAGTGTTTTAACTTTTACAAATGTTTTTGCTTCACAGTGTCATCAGCGCTTTTT
TGATATAAGCGTAGAAAATAAAACTTCTTTGATTGAAATTTTAAATGAACTTGGTAGAGAATGCGGTTTTAGTATCATAA
TAAAAGATTCATTAGCTAGAGAAAAGTTAAATCATACTCAAAATTATTTACACATAAGAAAAATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGCTTATGAATATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTGCATTATATAAGCTCTATTAGAGAAGGGCAAAGTATTACTAAAGCTTCAGTGGATTCAAGACCTAAAC
AAGGTGATTATGATAGTACTAAAGAAGCAGATAATCTAGTCATTAGCACAGATAAATTTGATTTTTGGGAAAAAATTTCA
GAAGAAATACAAGCTTTATTGGATGAAAATACAACTAAACCTATTATCAATACTAATGCAGGGATTATTACTTTAAATGC
TACTTTGTATGAGCTTACAAGGGTTGAAAAATATTTAAAAGATTTAAATAAAAGACTTAAAAAGCAAGTTTTAATTGATG
TAAGTATAGTTGCAGTACATTTAAATAAAAGTCATTCAAGTGGGATTAACTGGCAAGAGCTTGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATTAATAAAGGTGGTGCTAGAAATATCAATCTTAAAGCCAATGTTGAAACTAAAGCTATTTT
AAATTTATTACAAGAAAATGGCAAAACCATTGTGCTTTCTAACCCAAAACTCATGGCGCTTAATAATCAACAGGCTATTA
TTTCCATAGGTGATACGATTAATTATCAAGTAAAAGAAAGTTCCAAGGGTACTGAAAATGGTACGACCATTAGTGAAACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCTGAAATTTCAGATGATCACAAAATCATGCTTAG
AATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAACCATAGACAAAATAAACCAAGAAATATAGCACCTGATA
CCATACAAAAAAAGCTTTCTACTGTAGTTGAAGTTGATGATGGGCAAACTTTAATTTTGGGTGGATTAATTAGTAAAAAT
ACGATTAGTAATCATAATGAAGTCAGCGCTTTATCTAAAATACCACTTTTTGGAGCTTTATTTCAAGGAAAGCAAAATTT
AGAAGATATTAGCGAAATAGTTTTTATTATCAAACCAAGCTTAATAAAGGCTGATAAAAAAGTATTAAGCTTAAAAGAAT
TAGGTTTTGAACATGAAGATGATATGTTTTAA
ATGAAAAAAATAATATTTTTATTTATTAGTGTTTTAACTTTTACAAATGTTTTTGCTTCACAGTGTCATCAGCGCTTTTT
TGATATAAGCGTAGAAAATAAAACTTCTTTGATTGAAATTTTAAATGAACTTGGTAGAGAATGCGGTTTTAGTATCATAA
TAAAAGATTCATTAGCTAGAGAAAAGTTAAATCATACTCAAAATTATTTACACATAAGAAAAATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGCTTATGAATATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTGCATTATATAAGCTCTATTAGAGAAGGGCAAAGTATTACTAAAGCTTCAGTGGATTCAAGACCTAAAC
AAGGTGATTATGATAGTACTAAAGAAGCAGATAATCTAGTCATTAGCACAGATAAATTTGATTTTTGGGAAAAAATTTCA
GAAGAAATACAAGCTTTATTGGATGAAAATACAACTAAACCTATTATCAATACTAATGCAGGGATTATTACTTTAAATGC
TACTTTGTATGAGCTTACAAGGGTTGAAAAATATTTAAAAGATTTAAATAAAAGACTTAAAAAGCAAGTTTTAATTGATG
TAAGTATAGTTGCAGTACATTTAAATAAAAGTCATTCAAGTGGGATTAACTGGCAAGAGCTTGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATTAATAAAGGTGGTGCTAGAAATATCAATCTTAAAGCCAATGTTGAAACTAAAGCTATTTT
AAATTTATTACAAGAAAATGGCAAAACCATTGTGCTTTCTAACCCAAAACTCATGGCGCTTAATAATCAACAGGCTATTA
TTTCCATAGGTGATACGATTAATTATCAAGTAAAAGAAAGTTCCAAGGGTACTGAAAATGGTACGACCATTAGTGAAACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCTGAAATTTCAGATGATCACAAAATCATGCTTAG
AATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAACCATAGACAAAATAAACCAAGAAATATAGCACCTGATA
CCATACAAAAAAAGCTTTCTACTGTAGTTGAAGTTGATGATGGGCAAACTTTAATTTTGGGTGGATTAATTAGTAAAAAT
ACGATTAGTAATCATAATGAAGTCAGCGCTTTATCTAAAATACCACTTTTTGGAGCTTTATTTCAAGGAAAGCAAAATTT
AGAAGATATTAGCGAAATAGTTTTTATTATCAAACCAAGCTTAATAAAGGCTGATAAAAAAGTATTAAGCTTAAAAGAAT
TAGGTTTTGAACATGAAGATGATATGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsD | Campylobacter jejuni subsp. jejuni 81-176 |
56.41 |
100 |
0.57 |