Detailed information NTG1081255

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: UPTC15610_RS06820
• Genome accession: NZ_CP176591
• Coordinates: 1316585..1317499 (-)
• Length: 304 a.a.
• NCBI ID: WP_214099187.1
• Uniprot ID: -
• Organism: Campylobacter lari strain RM15610
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1311585..1322499

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
UPTC15610_RS06795 (UPTC15610_01338)	mgtE	1311922..1313265 (+)	1344	WP_214115493.1	magnesium transporter	-
UPTC15610_RS06800 (UPTC15610_01339)	tpx	1313278..1313796 (+)	519	WP_214115492.1	thiol peroxidase	-
UPTC15610_RS06805 (UPTC15610_01340)	-	1313793..1315178 (-)	1386	WP_214115491.1	replicative DNA helicase	-
UPTC15610_RS06810 (UPTC15610_01341)	cysK	1315191..1316093 (-)	903	WP_214115490.1	cysteine synthase A	-
UPTC15610_RS06815 (UPTC15610_01342)	-	1316190..1316492 (-)	303	WP_039619003.1	HU family DNA-binding protein	-
UPTC15610_RS06820 (UPTC15610_01343)	waaF	1316585..1317499 (-)	915	WP_214099187.1	lipopolysaccharide heptosyltransferase II	Regulator
UPTC15610_RS06825 (UPTC15610_01344)	-	1317552..1318376 (+)	825	WP_214115489.1	glycosyltransferase family 2 protein	-
UPTC15610_RS06830 (UPTC15610_01345)	-	1318356..1319072 (-)	717	WP_214115488.1	cytidylyltransferase domain-containing protein	-
UPTC15610_RS06835 (UPTC15610_01346)	-	1319059..1320090 (-)	1032	WP_214115487.1	nucleotidyltransferase family protein	-
UPTC15610_RS06840 (UPTC15610_01347)	neuC	1320090..1321247 (-)	1158	WP_214115486.1	UDP-N-acetylglucosamine 2-epimerase	-
UPTC15610_RS06845 (UPTC15610_01348)	neuB	1321237..1322247 (-)	1011	WP_214115485.1	N-acetylneuraminate synthase	-

Sequence

Protein

• Length: 304 a.a.
• Molecular weight: 34620.76 Da
• Isoelectric Point: 10.2615

>NTDB_id=1081255 UPTC15610_RS06820 WP_214099187.1 1316585..1317499(-) (waaF) [Campylobacter lari strain RM15610]
MNIFINLPTWLGDAVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKHFENAQILVENKKQRYKQILKARKNLSKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALNFKVTSNALKLPIKAKSTQKILGINPGAHFGSAKRW
EASYFARVAKEFSSTHQILIFGVESEREICDEIEHFLLKEGIKAKNLCGKTSIYTLCKNISILDLLITNDSGPMHIGAAY
GVKTVAVFGSTKFSQTSPWQENAKIAHLNLACMPCMQKVCPLKHHKCMKDLKPEVVINLAKTFF

Nucleotide

• Length: 915 bp

>NTDB_id=1081255 UPTC15610_RS06820 WP_214099187.1 1316585..1317499(-) (waaF) [Campylobacter lari strain RM15610]
ATGAATATTTTTATCAACCTTCCTACTTGGCTTGGCGATGCGGTGATGGCTAGTGCGGCTATTTATGCTATAAAAGAAAA
ATATCCCCAAGCCAAATTTACTTTTTATGGTTCTTTTGTTAGCACAGAGCTTTTTAAACACTTTGAAAATGCTCAAATTT
TAGTAGAAAATAAAAAGCAAAGATATAAGCAAATTTTAAAAGCTAGAAAAAACCTTAGTAAATTTGATTTAGCTTTTTCA
TTTCGCTCAGCATTTTCAAGCAAGATCATTTTAAATCTAATCAAAGCAAAAAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACATCAAGTCTTAAAATACTTAAATTTTATAGAAAAAGCCTTAAATTTTAAAGTCACTTCAAATGCTTTAA
AACTCCCTATAAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAACCCAGGTGCGCATTTTGGAAGTGCTAAAAGATGG
GAAGCGAGCTATTTTGCAAGGGTAGCAAAAGAATTTAGCTCCACGCATCAAATTTTAATCTTTGGAGTAGAAAGCGAGAG
AGAAATTTGTGATGAAATTGAACATTTTCTTTTAAAAGAAGGCATAAAAGCAAAAAATCTTTGTGGTAAAACCAGCATTT
ATACTTTATGTAAAAATATTTCTATACTTGATTTACTCATCACAAACGATAGTGGTCCTATGCACATAGGTGCAGCTTAT
GGGGTGAAAACGGTGGCTGTTTTTGGCTCTACTAAATTTAGTCAAACCTCTCCTTGGCAAGAAAATGCTAAAATAGCACA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACACCACAAATGCATGAAAGACTTAAAGCCTG
AAGTAGTAATAAATTTAGCAAAAACATTTTTTTAA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (110-284)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	64.331	100	0.664