Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   UPTC15610_RS02020 Genome accession   NZ_CP176591
Coordinates   375399..376790 (+) Length   463 a.a.
NCBI ID   WP_214114874.1    Uniprot ID   -
Organism   Campylobacter lari strain RM15610     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 370399..381790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC15610_RS02005 (UPTC15610_00393) - 370784..371428 (+) 645 WP_214114871.1 HAD family hydrolase -
  UPTC15610_RS02010 (UPTC15610_00394) nifJ 371546..375100 (+) 3555 WP_257914314.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  UPTC15610_RS02015 (UPTC15610_00395) - 375167..375427 (+) 261 WP_257914315.1 hypothetical protein -
  UPTC15610_RS02020 (UPTC15610_00396) ctsD 375399..376790 (+) 1392 WP_214114874.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  UPTC15610_RS02025 (UPTC15610_00397) - 376771..377100 (+) 330 WP_052243245.1 transformation system, membrane protein CtsX -
  UPTC15610_RS02030 (UPTC15610_00398) - 377093..378607 (+) 1515 WP_214098954.1 GspE/PulE family protein -
  UPTC15610_RS02035 (UPTC15610_00399) - 378604..379764 (+) 1161 WP_214098953.1 type II secretion system F family protein -
  UPTC15610_RS02040 (UPTC15610_00400) - 379761..380513 (-) 753 WP_214114875.1 TSUP family transporter -
  UPTC15610_RS02045 (UPTC15610_00401) - 380498..381247 (-) 750 WP_214114876.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52597.44 Da        Isoelectric Point: 7.9605

>NTDB_id=1081245 UPTC15610_RS02020 WP_214114874.1 375399..376790(+) (ctsD) [Campylobacter lari strain RM15610]
MKKIIFLFISVLTFTNVFASQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNHTQNYLHIRKMSLREI
FKLLLMENNLVYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSTKEADNLVISTDKFDFWEKIS
EEIQALLDENTTKPIINTNAGIITLNATLYELTRVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNG
DDNDFIINKGGARNINLKANVETKAILNLLQENGKTIVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIKADKKVLSLKELGFEHEDDMF

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=1081245 UPTC15610_RS02020 WP_214114874.1 375399..376790(+) (ctsD) [Campylobacter lari strain RM15610]
ATGAAAAAAATAATATTTTTATTTATTAGTGTTTTAACTTTTACAAATGTTTTTGCTTCACAGTGTCATCAGCGCTTTTT
TGATATAAGCGTAGAAAATAAAACTTCTTTGATTGAAATTTTAAATGAACTTGGTAGAGAATGTGGTTTTAGTATCATAA
TAAAAGATTCATTAGCTAGAGAAAAGTTAAATCATACTCAAAATTATTTACACATAAGAAAAATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGTTTATGAATATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTGCATTATATAAGCTCTATTAGAGAAGGGCAAAGTATTACTAAAGCTTCAGTGGATTCAAGACCTAAAC
AAGGTGATTATGATAGTACTAAAGAAGCAGATAATCTAGTCATTAGCACAGATAAATTTGATTTTTGGGAAAAAATTTCA
GAAGAAATACAAGCTTTATTAGATGAAAATACAACTAAACCTATTATCAATACTAATGCAGGGATTATTACTTTAAATGC
TACTTTGTATGAGCTTACAAGGGTTGAAAAATATTTAAAAGATTTAAATAAAAGACTTAAAAAGCAAGTTTTAATTGATG
TAAGTATAGTTGCAGTACATTTAAATAAAAGTCATTCAAGTGGGATTAACTGGCAAGAGCTTGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATTAATAAAGGTGGTGCTAGAAATATCAATCTTAAAGCCAATGTTGAAACTAAAGCTATTTT
AAATTTATTACAAGAAAATGGCAAAACCATTGTGCTTTCTAACCCAAAACTCATGGCGCTTAATAATCAACAGGCTATTA
TTTCCATAGGTGATACGATTAATTATCAAGTAAAAGAAAGTTCCAAGGGTACTGAAAATGGTACGACCATTAGTGAAACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCTGAAATTTCAGATGATCACAAAATCATGCTTAG
AATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAACCATAGACAAAATAAACCAAGAAATATAGCACCTGATA
CCATACAAAAAAAGCTTTCTACTGTAGTTGAAGTTGATGATGGGCAAACTTTAATTTTGGGTGGATTAATTAGTAAAAAT
ACGATTAGTAATCATAATGAAGTCAGCGCTTTATCTAAAATACCACTTTTTGGAGCTTTATTTCAAGGAAAGCAAAATTT
AGAAGATATTAGCGAAATAGTTTTTATTATCAAACCAAGCTTAATAAAGGCTGATAAAAAAGTATTAAGCTTAAAAGAAT
TAGGTTTTGAACATGAAGATGATATGTTTTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(269-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

56.41

100

0.57

Multiple sequence alignment