Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   UPTC5117_RS06725 Genome accession   NZ_CP176590
Coordinates   1291989..1292903 (-) Length   304 a.a.
NCBI ID   WP_214099187.1    Uniprot ID   -
Organism   Campylobacter lari strain S4:11     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1286989..1297903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5117_RS06700 (UPTC5117_01316) mgtE 1287325..1288668 (+) 1344 WP_039642095.1 magnesium transporter -
  UPTC5117_RS06705 (UPTC5117_01317) tpx 1288681..1289199 (+) 519 WP_214116029.1 thiol peroxidase -
  UPTC5117_RS06710 (UPTC5117_01318) - 1289196..1290581 (-) 1386 WP_087699265.1 replicative DNA helicase -
  UPTC5117_RS06715 (UPTC5117_01319) cysK 1290594..1291496 (-) 903 WP_257913038.1 cysteine synthase A -
  UPTC5117_RS06720 (UPTC5117_01320) - 1291594..1291896 (-) 303 WP_039619003.1 HU family DNA-binding protein -
  UPTC5117_RS06725 (UPTC5117_01321) waaF 1291989..1292903 (-) 915 WP_214099187.1 lipopolysaccharide heptosyltransferase II Regulator
  UPTC5117_RS06730 (UPTC5117_01322) - 1292956..1293795 (+) 840 WP_257929389.1 glycosyltransferase family 2 protein -
  UPTC5117_RS06735 (UPTC5117_01323) - 1293849..1294838 (+) 990 WP_257929391.1 polysaccharide pyruvyl transferase family protein -
  UPTC5117_RS06740 (UPTC5117_01324) - 1295060..1295968 (+) 909 WP_308400896.1 glycosyltransferase family 2 protein -
  UPTC5117_RS06745 (UPTC5117_01325) yibB 1295963..1296901 (-) 939 WP_257929392.1 protein YibB -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 34620.76 Da        Isoelectric Point: 10.2615

>NTDB_id=1081237 UPTC5117_RS06725 WP_214099187.1 1291989..1292903(-) (waaF) [Campylobacter lari strain S4:11]
MNIFINLPTWLGDAVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKHFENAQILVENKKQRYKQILKARKNLSKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALNFKVTSNALKLPIKAKSTQKILGINPGAHFGSAKRW
EASYFARVAKEFSSTHQILIFGVESEREICDEIEHFLLKEGIKAKNLCGKTSIYTLCKNISILDLLITNDSGPMHIGAAY
GVKTVAVFGSTKFSQTSPWQENAKIAHLNLACMPCMQKVCPLKHHKCMKDLKPEVVINLAKTFF

Nucleotide


Download         Length: 915 bp        

>NTDB_id=1081237 UPTC5117_RS06725 WP_214099187.1 1291989..1292903(-) (waaF) [Campylobacter lari strain S4:11]
ATGAATATTTTTATCAACCTTCCTACTTGGCTTGGCGATGCGGTGATGGCTAGTGCGGCTATTTATGCTATAAAAGAAAA
ATATCCCCAAGCCAAATTTACTTTTTATGGTTCTTTTGTTAGCACAGAGCTTTTTAAACACTTTGAAAATGCTCAAATTT
TAGTAGAAAATAAAAAGCAAAGATATAAGCAAATTTTAAAAGCTAGAAAAAACCTTAGTAAATTTGATTTAGCTTTTTCA
TTTCGCTCAGCATTTTCAAGCAAGATCATTTTAAATCTAATCAAAGCAAAAAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACATCAAGTCTTAAAATACTTAAATTTTATAGAAAAAGCCTTAAATTTTAAAGTCACTTCAAATGCTTTAA
AACTCCCTATAAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAACCCAGGTGCGCATTTTGGAAGTGCCAAAAGATGG
GAAGCGAGCTATTTTGCAAGGGTAGCAAAAGAATTTAGCTCCACGCATCAAATTTTAATCTTTGGAGTAGAAAGCGAGAG
AGAAATTTGTGATGAAATTGAACATTTTCTTTTAAAAGAAGGCATAAAAGCAAAAAATCTTTGTGGTAAAACCAGCATTT
ATACTTTATGTAAAAATATTTCTATACTTGATTTACTCATCACAAACGATAGTGGTCCTATGCACATAGGTGCAGCTTAT
GGGGTGAAAACGGTGGCTGTTTTTGGCTCTACTAAATTTAGTCAAACCTCTCCTTGGCAAGAAAATGCTAAAATAGCACA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACACCACAAATGCATGAAAGACTTAAAGCCTG
AAGTAGTAATAAATTTAGCAAAAACATTTTTTTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(110-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.331

100

0.664

Multiple sequence alignment