Detailed information
Bioinformatically predicted
Overview
| Name | ctsD | Type | Machinery gene |
| Locus tag | UPTC5117_RS01945 | Genome accession | NZ_CP176590 |
| Coordinates | 357617..359008 (+) | Length | 463 a.a. |
| NCBI ID | WP_087685207.1 | Uniprot ID | A0A698GA44 |
| Organism | Campylobacter lari strain S4:11 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 352617..364008
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UPTC5117_RS01930 (UPTC5117_00381) | - | 353002..353646 (+) | 645 | WP_257910918.1 | HAD family hydrolase | - |
| UPTC5117_RS01935 (UPTC5117_00382) | nifJ | 353764..357318 (+) | 3555 | WP_257929464.1 | pyruvate:ferredoxin (flavodoxin) oxidoreductase | - |
| UPTC5117_RS01940 (UPTC5117_00383) | - | 357385..357645 (+) | 261 | WP_126340701.1 | hypothetical protein | - |
| UPTC5117_RS01945 (UPTC5117_00384) | ctsD | 357617..359008 (+) | 1392 | WP_087685207.1 | pilus (MSHA type) biogenesis protein MshL | Machinery gene |
| UPTC5117_RS01950 (UPTC5117_00385) | - | 358989..359318 (+) | 330 | WP_052243245.1 | transformation system, membrane protein CtsX | - |
| UPTC5117_RS01955 (UPTC5117_00386) | - | 359311..360825 (+) | 1515 | WP_257929463.1 | GspE/PulE family protein | - |
| UPTC5117_RS01960 (UPTC5117_00387) | - | 360822..361982 (+) | 1161 | WP_257929462.1 | type II secretion system F family protein | - |
| UPTC5117_RS01965 (UPTC5117_00388) | - | 361979..362731 (-) | 753 | WP_087689560.1 | TSUP family transporter | - |
| UPTC5117_RS01970 (UPTC5117_00389) | - | 362716..363465 (-) | 750 | WP_087685211.1 | TIGR02757 family protein | - |
Sequence
Protein
Download Length: 463 a.a. Molecular weight: 52569.39 Da Isoelectric Point: 7.9605
>NTDB_id=1081227 UPTC5117_RS01945 WP_087685207.1 357617..359008(+) (ctsD) [Campylobacter lari strain S4:11]
MKKIIFLFISVLTFTNVFASQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNHTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSTKEADNLVISTDKFDFWEKIS
EEIQALLDENTTKPIINTNAGIITLNATLYELTRVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNG
DDNDFIINKGGARNINLKANVETKAILNLLQENGKTIVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIKADKKVLSLKELGFEHEDDMF
MKKIIFLFISVLTFTNVFASQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNHTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSTKEADNLVISTDKFDFWEKIS
EEIQALLDENTTKPIINTNAGIITLNATLYELTRVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNG
DDNDFIINKGGARNINLKANVETKAILNLLQENGKTIVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIKADKKVLSLKELGFEHEDDMF
Nucleotide
Download Length: 1392 bp
>NTDB_id=1081227 UPTC5117_RS01945 WP_087685207.1 357617..359008(+) (ctsD) [Campylobacter lari strain S4:11]
ATGAAAAAAATAATATTTTTATTTATTAGTGTTTTAACTTTTACAAATGTTTTTGCTTCACAGTGTCATCAGCGCTTTTT
TGATATAAGCGTAGAAAATAAAACTTCTTTGATTGAAATTTTAAATGAACTTGGTAGAGAATGCGGTTTTAGTATCATAA
TAAAAGATTCATTAGCTAGAGAAAAATTAAATCATACTCAAAATTATTTACACATAAGAAAAATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGCTTATGAATATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTGCATTATATAAGCTCTATTAGAGAAGGGCAAAGTATTACTAAAGCTTCAGTGGATTCAAGACCTAAAC
AAGGTGATTATGATAGTACTAAAGAAGCAGATAATCTAGTCATTAGCACAGATAAATTTGATTTTTGGGAAAAAATTTCA
GAAGAAATACAAGCTTTATTGGATGAAAATACAACTAAACCTATTATCAATACTAATGCAGGGATTATTACTTTAAATGC
TACTTTGTATGAGCTTACAAGGGTTGAAAAATATTTAAAAGATTTAAATAAAAGACTTAAAAAGCAAGTTTTAATTGATG
TAAGTATAGTTGCAGTACATTTAAATAAAAGTCATTCAAGTGGGATTAACTGGCAAGAGCTTGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATTAATAAAGGTGGTGCTAGAAATATCAATCTTAAAGCCAATGTTGAAACTAAAGCTATTTT
AAATTTATTACAAGAAAATGGCAAAACCATTGTGCTTTCTAACCCAAAACTCATGGCGCTTAATAATCAACAGGCTATTA
TTTCCATAGGTGATACGATTAATTATCAAGTAAAAGAAAGTTCCAAGGGTACTGAAAATGGTACGACCATTAGTGAAACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCTGAAATTTCAGATGATCACAAAATCATGCTTAG
AATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAACCATAGACAAAATAAACCAAGAAATATAGCACCTGATA
CCATACAAAAAAAGCTTTCTACTGTAGTTGAAGTTGATGATGGGCAAACTTTAATTTTGGGTGGATTAATTAGTAAAAAT
ACGATTAGTAATCATAATGAAGTCAGCGCTTTATCTAAAATACCACTTTTTGGAGCTTTATTTCAAGGAAAGCAAAATTT
AGAAGATATTAGCGAAATAGTTTTTATTATCAAACCAAGCTTAATAAAGGCTGATAAAAAAGTATTAAGCTTAAAAGAAT
TAGGTTTTGAACATGAAGATGATATGTTTTAA
ATGAAAAAAATAATATTTTTATTTATTAGTGTTTTAACTTTTACAAATGTTTTTGCTTCACAGTGTCATCAGCGCTTTTT
TGATATAAGCGTAGAAAATAAAACTTCTTTGATTGAAATTTTAAATGAACTTGGTAGAGAATGCGGTTTTAGTATCATAA
TAAAAGATTCATTAGCTAGAGAAAAATTAAATCATACTCAAAATTATTTACACATAAGAAAAATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGCTTATGAATATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTGCATTATATAAGCTCTATTAGAGAAGGGCAAAGTATTACTAAAGCTTCAGTGGATTCAAGACCTAAAC
AAGGTGATTATGATAGTACTAAAGAAGCAGATAATCTAGTCATTAGCACAGATAAATTTGATTTTTGGGAAAAAATTTCA
GAAGAAATACAAGCTTTATTGGATGAAAATACAACTAAACCTATTATCAATACTAATGCAGGGATTATTACTTTAAATGC
TACTTTGTATGAGCTTACAAGGGTTGAAAAATATTTAAAAGATTTAAATAAAAGACTTAAAAAGCAAGTTTTAATTGATG
TAAGTATAGTTGCAGTACATTTAAATAAAAGTCATTCAAGTGGGATTAACTGGCAAGAGCTTGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATTAATAAAGGTGGTGCTAGAAATATCAATCTTAAAGCCAATGTTGAAACTAAAGCTATTTT
AAATTTATTACAAGAAAATGGCAAAACCATTGTGCTTTCTAACCCAAAACTCATGGCGCTTAATAATCAACAGGCTATTA
TTTCCATAGGTGATACGATTAATTATCAAGTAAAAGAAAGTTCCAAGGGTACTGAAAATGGTACGACCATTAGTGAAACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCTGAAATTTCAGATGATCACAAAATCATGCTTAG
AATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAACCATAGACAAAATAAACCAAGAAATATAGCACCTGATA
CCATACAAAAAAAGCTTTCTACTGTAGTTGAAGTTGATGATGGGCAAACTTTAATTTTGGGTGGATTAATTAGTAAAAAT
ACGATTAGTAATCATAATGAAGTCAGCGCTTTATCTAAAATACCACTTTTTGGAGCTTTATTTCAAGGAAAGCAAAATTT
AGAAGATATTAGCGAAATAGTTTTTATTATCAAACCAAGCTTAATAAAGGCTGATAAAAAAGTATTAAGCTTAAAAGAAT
TAGGTTTTGAACATGAAGATGATATGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsD | Campylobacter jejuni subsp. jejuni 81-176 |
56.41 |
100 |
0.57 |