Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   UPTC5117_RS01610 Genome accession   NZ_CP176590
Coordinates   291341..292519 (+) Length   392 a.a.
NCBI ID   WP_257929862.1    Uniprot ID   -
Organism   Campylobacter lari strain S4:11     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 286341..297519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5117_RS01595 (UPTC5117_00316) - 287002..287397 (-) 396 WP_214114832.1 sugar 3,4-ketoisomerase -
  UPTC5117_RS01600 (UPTC5117_00317) - 287523..289286 (+) 1764 WP_257929860.1 hypothetical protein -
  UPTC5117_RS01605 (UPTC5117_00318) - 289317..291344 (+) 2028 WP_257929861.1 capsular polysaccharide biosynthesis protein -
  UPTC5117_RS01610 (UPTC5117_00319) kpsS 291341..292519 (+) 1179 WP_257929862.1 capsule biosynthesis protein Regulator
  UPTC5117_RS01615 (UPTC5117_00320) - 292516..293814 (-) 1299 WP_410689051.1 hypothetical protein -
  UPTC5117_RS01620 (UPTC5117_00321) - 294179..295309 (+) 1131 WP_257929492.1 DUF829 domain-containing protein -
  UPTC5117_RS01625 (UPTC5117_00322) - 295319..296692 (+) 1374 WP_257929491.1 cytochrome P450 -
  UPTC5117_RS01630 (UPTC5117_00323) - 296689..297042 (+) 354 WP_039627957.1 membrane protein -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 46441.99 Da        Isoelectric Point: 10.1737

>NTDB_id=1081226 UPTC5117_RS01610 WP_257929862.1 291341..292519(+) (kpsS) [Campylobacter lari strain S4:11]
MNLSKKLKKFSGKNVLLLQGPVGGFFRKIATKIPKAKVYKVNFNGGDFFFYPFKSINYTKSLAELEDFYKKLFEERQIQV
IIMYNDCRKVHEIAINVAKQMGIEVWIFEEGYIRPNFITFEKDGVNANSTLPREKEFYLNQKKFDKDFKFKTFSSTFRNM
AFASFLYWLFAFLFSWYFNNSLHHRSLKLFDFLPWLCSVYRKNKYKITEKSLNEKILSLKQKYFLAILQVHNDTQLSHHY
KKTTEKFIEEVVISFANHAKAKSYLIFKHHPMDRGYRDYTKLIEDLSLKYNVEGRILYVHDLHLPTLLINARGTIVINST
VGLSALYHNSPLKVMGKAFYDIEGLTYQKSLHTFWKECRAYKPDAVLHAKFRNYVIYKTQVNGNFFKNTSLD

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=1081226 UPTC5117_RS01610 WP_257929862.1 291341..292519(+) (kpsS) [Campylobacter lari strain S4:11]
ATGAATTTAAGTAAAAAGTTAAAAAAATTTTCTGGTAAAAATGTTTTATTACTCCAAGGACCTGTGGGAGGATTTTTTCG
TAAAATTGCTACAAAAATTCCAAAAGCCAAGGTTTATAAAGTAAATTTTAATGGCGGAGATTTTTTCTTTTATCCTTTTA
AAAGCATTAATTATACTAAAAGTTTAGCCGAGCTTGAAGACTTTTATAAAAAGCTTTTTGAAGAAAGACAAATTCAAGTT
ATCATTATGTATAATGATTGTAGAAAAGTTCATGAAATCGCCATTAATGTAGCTAAGCAAATGGGTATTGAAGTATGGAT
TTTTGAAGAAGGTTATATAAGACCAAACTTCATTACTTTTGAAAAAGATGGAGTGAATGCAAACTCCACTTTGCCAAGAG
AAAAAGAATTTTATCTAAACCAGAAAAAATTTGATAAAGATTTTAAATTTAAAACTTTCTCAAGTACTTTTAGAAATATG
GCCTTTGCTTCATTTTTATACTGGCTTTTTGCTTTTTTATTTTCTTGGTATTTTAATAATTCTTTACACCATAGAAGTTT
AAAATTATTTGACTTTTTACCTTGGCTTTGCTCAGTATATAGAAAAAATAAATACAAAATCACAGAAAAAAGTTTAAATG
AAAAAATTCTTTCTCTAAAACAAAAGTATTTTTTAGCTATTTTACAAGTGCATAATGATACTCAACTATCCCATCATTAT
AAAAAAACTACAGAAAAATTTATAGAAGAAGTGGTTATCTCTTTTGCTAATCATGCCAAAGCAAAGTCTTATTTAATTTT
TAAACACCATCCCATGGATCGTGGTTATAGGGACTATACTAAACTTATAGAAGATTTGAGTTTAAAATACAATGTCGAGG
GTAGAATTTTATATGTGCACGATTTACACTTACCTACGCTCTTAATCAATGCAAGAGGCACTATAGTTATAAATAGCACA
GTAGGACTTTCTGCTTTATATCACAATAGTCCTTTAAAGGTCATGGGTAAAGCCTTTTATGATATAGAAGGCCTAACGTA
TCAAAAAAGCTTGCATACTTTTTGGAAAGAATGCAGAGCCTATAAACCTGATGCGGTTTTGCACGCTAAATTTAGAAATT
ATGTGATATATAAAACCCAAGTAAATGGGAATTTTTTCAAAAATACTAGTTTAGATTAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(80-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.013

100

0.615

Multiple sequence alignment