Detailed information NTG1081219

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: UPTC5105_RS06115
• Genome accession: NZ_CP176589
• Coordinates: 1182448..1183362 (-)
• Length: 304 a.a.
• NCBI ID: WP_257904934.1
• Uniprot ID: -
• Organism: Campylobacter lari strain S3:28
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1177448..1188362

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
UPTC5105_RS06090 (UPTC5105_01205)	mgtE	1177784..1179127 (+)	1344	WP_039628803.1	magnesium transporter	-
UPTC5105_RS06095 (UPTC5105_01206)	tpx	1179141..1179659 (+)	519	WP_039618996.1	thiol peroxidase	-
UPTC5105_RS06100 (UPTC5105_01207)	-	1179656..1181041 (-)	1386	WP_257904936.1	replicative DNA helicase	-
UPTC5105_RS06105 (UPTC5105_01208)	cysK	1181054..1181956 (-)	903	WP_257904935.1	cysteine synthase A	-
UPTC5105_RS06110 (UPTC5105_01209)	-	1182053..1182355 (-)	303	WP_039619003.1	HU family DNA-binding protein	-
UPTC5105_RS06115 (UPTC5105_01210)	waaF	1182448..1183362 (-)	915	WP_257904934.1	lipopolysaccharide heptosyltransferase II	Regulator
UPTC5105_RS06120 (UPTC5105_01211)	-	1183416..1184222 (+)	807	WP_257904932.1	glycosyltransferase family 2 protein	-
UPTC5105_RS06125 (UPTC5105_01212)	-	1184279..1184953 (+)	675	WP_373274089.1	glycosyltransferase family 25 protein	-
UPTC5105_RS06130 (UPTC5105_01213)	rfbA	1184950..1185825 (+)	876	WP_039619036.1	glucose-1-phosphate thymidylyltransferase RfbA	-
UPTC5105_RS06135 (UPTC5105_01214)	rfbB	1185826..1186854 (+)	1029	WP_257904930.1	dTDP-glucose 4,6-dehydratase	-
UPTC5105_RS06140 (UPTC5105_01215)	-	1186856..1187251 (+)	396	WP_257904929.1	sugar 3,4-ketoisomerase	-
UPTC5105_RS06145 (UPTC5105_01216)	-	1187248..1187721 (+)	474	WP_257904928.1	N-acetyltransferase	-

Sequence

Protein

• Length: 304 a.a.
• Molecular weight: 34669.77 Da
• Isoelectric Point: 10.1921

>NTDB_id=1081219 UPTC5105_RS06115 WP_257904934.1 1182448..1183362(-) (waaF) [Campylobacter lari strain S3:28]
MNIFINLPTWLGDAVMASAAIYAIKEKHPQAKFTFYGSFVSTELFKHFENAQILVENKKQRYRQILQARKNLGKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALNFKATSNALKLPIKAKSTQKILGINAGAHFGIAKRW
EASYFARVAREFSSTHQILIFGVESEREICDEIEHYLLKEGIKVKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAAY
GVKTVAIFGSTKFSQTSPWQENAKIAHLDLACMPCMQKVCPLKHHKCMKDLKPEVVINLAKTFF

Nucleotide

• Length: 915 bp

>NTDB_id=1081219 UPTC5105_RS06115 WP_257904934.1 1182448..1183362(-) (waaF) [Campylobacter lari strain S3:28]
ATGAATATTTTTATCAATCTTCCCACTTGGCTTGGCGATGCAGTGATGGCTAGTGCGGCTATTTATGCTATAAAAGAAAA
ACACCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGCACAGAGCTTTTTAAACATTTTGAAAATGCTCAAATTT
TAGTAGAAAATAAAAAGCAAAGATATAGGCAAATTTTACAAGCTAGAAAAAACCTTGGTAAATTTGATCTAGCTTTTTCG
TTTCGCTCGGCATTTTCAAGTAAGATTATTTTAAATCTAATCAAAGCAAAAAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACATCAAGTTTTAAAATACTTAAATTTCATAGAAAAAGCCTTAAATTTTAAAGCTACTTCAAATGCTTTAA
AGCTTCCTATAAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAATGCAGGTGCACATTTTGGAATTGCGAAAAGATGG
GAAGCAAGCTATTTTGCAAGGGTAGCAAGAGAATTTAGCTCCACTCATCAAATTTTAATCTTTGGAGTGGAAAGTGAGAG
AGAAATTTGTGATGAAATTGAGCATTATCTTTTAAAAGAAGGCATAAAAGTAAAAAATCTTTGTGGTAAAACTAGTATTT
ATACTTTATGTAAAAATATTTCTATGCTTGATTTGCTCATCACAAACGATAGTGGTCCTATGCATATAGGCGCAGCTTAT
GGGGTAAAAACGGTGGCTATTTTTGGCTCGACTAAATTTAGTCAAACATCGCCTTGGCAAGAAAATGCTAAAATAGCTCA
TCTTGATCTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACATCACAAATGCATGAAAGACTTAAAGCCTG
AAGTAGTAATAAATTTAGCAAAAACATTTTTTTAG

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (109-284)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	64.968	100	0.671