Detailed information NTG1081194

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: UPTC5100_RS02000
• Genome accession: NZ_CP176588
• Coordinates: 368839..370230 (+)
• Length: 463 a.a.
• NCBI ID: WP_039617665.1
• Uniprot ID: -
• Organism: Campylobacter lari strain M595a
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 363839..375230

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
UPTC5100_RS01985 (UPTC5100_00392)	-	364224..364868 (+)	645	WP_039617658.1	HAD family hydrolase	-
UPTC5100_RS01990 (UPTC5100_00393)	nifJ	364986..368540 (+)	3555	WP_258108740.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
UPTC5100_RS01995 (UPTC5100_00394)	-	368607..368867 (+)	261	WP_263689877.1	hypothetical protein	-
UPTC5100_RS02000 (UPTC5100_00395)	ctsD	368839..370230 (+)	1392	WP_039617665.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
UPTC5100_RS02005 (UPTC5100_00396)	-	370211..370540 (+)	330	WP_214118982.1	hypothetical protein	-
UPTC5100_RS02010 (UPTC5100_00397)	-	370533..372047 (+)	1515	WP_258108739.1	GspE/PulE family protein	-
UPTC5100_RS02015 (UPTC5100_00398)	-	372044..373204 (+)	1161	WP_257936318.1	type II secretion system F family protein	-
UPTC5100_RS02020 (UPTC5100_00399)	-	373201..373953 (-)	753	WP_039617669.1	TSUP family transporter	-
UPTC5100_RS02025 (UPTC5100_00400)	-	373938..374687 (-)	750	WP_214135009.1	TIGR02757 family protein	-

Sequence

Protein

• Length: 463 a.a.
• Molecular weight: 52627.43 Da
• Isoelectric Point: 7.9611

>NTDB_id=1081194 UPTC5100_RS02000 WP_039617665.1 368839..370230(+) (ctsD) [Campylobacter lari strain M595a]
MKKIIFLFISILTFTNVFASQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNHTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSTKEADNLVISTDKFDFWEKIS
EEIQALLDENTTKPIINTNAGIITLNATLYELTRVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNG
DDNDFIINKGGVRNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIRADKKVLSLKELGFEHEDDMF

Nucleotide

• Length: 1392 bp

>NTDB_id=1081194 UPTC5100_RS02000 WP_039617665.1 368839..370230(+) (ctsD) [Campylobacter lari strain M595a]
ATGAAAAAAATAATATTTTTATTTATTAGTATTTTAACTTTTACAAATGTTTTTGCTTCACAGTGTCATCAGCGCTTTTT
TGATATAAGTGTAGAAAATAAAACTTCTTTGATCGAAATTTTAAATGAACTTGGTAGAGAATGTGGTTTTAGTATTATAA
TAAAAGATTCATTAGCTAGAGAAAAGTTAAATCATACCCAAAATTATCTACACATAAGAAAAATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGCTTACGAGTATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTGCATTATATAAGCTCTATTAGAGAAGGGCAAAGTATCACCAAAGCTTCAGTAGATTCAAGACCTAAAC
AAGGTGATTATGATAGTACTAAAGAAGCAGATAATCTAGTTATTAGCACAGATAAATTTGATTTTTGGGAAAAAATTTCA
GAAGAAATACAAGCTTTATTAGATGAAAATACAACTAAGCCTATTATTAATACTAATGCAGGGATTATCACTTTAAATGC
TACTTTATACGAGCTTACAAGAGTTGAAAAATATCTAAAAGATTTAAATAAAAGACTTAAAAAGCAAGTTTTAATTGATG
TAAGTATAGTTGCCGTACATTTAAATAAAAGTCATTCAAGTGGGATTAACTGGCAAGAGCTTGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATCAATAAAGGTGGTGTTAGAAATATCAATCTTAAAGCCAATGTTGAAACTAAAGCTATTTT
AAATTTATTACAAGAAAATGGTAAAACCACTGTGCTTTCTAACCCAAAACTCATGGCGCTTAATAATCAACAAGCCATTA
TTTCCATAGGTGATACGATTAATTATCAAGTAAAAGAAAGCTCTAAGGGTACTGAAAATGGTACGACTATTAGTGAGACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCTGAAATTTCAGATGATCACAAAATCATGCTTAG
AATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAACCATAGACAAAATAAACCAAGAAATATAGCGCCAGATA
CCATACAAAAAAAGCTTTCTACTGTAGTTGAAGTTGATGATGGGCAAACTTTAATTTTGGGTGGATTGATTAGTAAAAAT
ACGATTAGTAATCATAATGAAGTCAGTGCTTTATCTAAAATACCACTTTTTGGAGCTTTATTTCAAGGAAAGCAAAATTT
AGAAGATATTAGCGAAATAGTTTTTATCATCAAACCAAGTTTAATAAGAGCTGATAAAAAAGTGTTGAGTTTAAAAGAAT
TAGGTTTTGAACATGAAGATGATATGTTTTAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (269-443)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	56.838	100	0.575