Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   UPTC5098_RS06620 Genome accession   NZ_CP176587
Coordinates   1255547..1256467 (-) Length   306 a.a.
NCBI ID   WP_410708066.1    Uniprot ID   -
Organism   Campylobacter lari strain 2a     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1250547..1261467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5098_RS06595 (UPTC5098_01300) cysK 1250601..1251503 (-) 903 WP_039619000.1 cysteine synthase A -
  UPTC5098_RS06600 (UPTC5098_01301) - 1251600..1251902 (-) 303 WP_039619003.1 HU family DNA-binding protein -
  UPTC5098_RS06605 (UPTC5098_01302) waaF 1251995..1252909 (-) 915 WP_410708064.1 lipopolysaccharide heptosyltransferase II Regulator
  UPTC5098_RS06610 (UPTC5098_01303) - 1252923..1254035 (-) 1113 WP_258108348.1 hypothetical protein -
  UPTC5098_RS06615 (UPTC5098_01304) - 1254044..1255546 (-) 1503 WP_258108347.1 MBOAT family O-acyltransferase -
  UPTC5098_RS06620 (UPTC5098_01305) waaF 1255547..1256467 (-) 921 WP_410708066.1 lipopolysaccharide heptosyltransferase II Regulator
  UPTC5098_RS06625 (UPTC5098_01306) - 1256520..1257326 (+) 807 WP_258108288.1 glycosyltransferase family 2 protein -
  UPTC5098_RS06630 (UPTC5098_01307) - 1257331..1259262 (-) 1932 WP_410708067.1 motility associated factor glycosyltransferase family protein -
  UPTC5098_RS06635 (UPTC5098_01308) - 1259262..1260026 (-) 765 WP_258108291.1 oxidoreductase -
  UPTC5098_RS06640 (UPTC5098_01309) - 1260026..1260733 (-) 708 WP_258108292.1 acylneuraminate cytidylyltransferase family protein -

Sequence

Protein


Download         Length: 306 a.a.        Molecular weight: 34897.04 Da        Isoelectric Point: 10.2942

>NTDB_id=1081186 UPTC5098_RS06620 WP_410708066.1 1255547..1256467(-) (waaF) [Campylobacter lari strain 2a]
MNIFINLPTWLGDAVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKRFENAQILVENKKQRYRQILQARKNLVKFDLAFS
FRSAFSSKIVLNLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALNFKATSNALKLPIKAKSTQKILGINPGAHFGSAKRW
EASYFARVAKEFSSTHQILIFGVESEREICDEIEHFLLKEGIKAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAVY
GVKTVAIFGSTKFSQTSPWQENAKIAHLNLTCMPCMQKVCPLKHHKCMKDLKPEMVINLARNFSGV

Nucleotide


Download         Length: 921 bp        

>NTDB_id=1081186 UPTC5098_RS06620 WP_410708066.1 1255547..1256467(-) (waaF) [Campylobacter lari strain 2a]
ATGAATATTTTTATCAACCTTCCTACTTGGCTTGGCGATGCGGTGATGGCTAGTGCGGCTATTTATGCTATAAAAGAAAA
ATACCCTCAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGTACAGAGCTTTTTAAACGCTTTGAAAATGCTCAAATTT
TAGTAGAAAATAAAAAGCAAAGATATAGGCAGATTTTACAAGCTAGAAAAAATCTTGTTAAATTTGATCTAGCTTTTTCA
TTTCGCTCGGCATTTTCAAGCAAGATTGTTTTAAATCTAATCAAAGCAAAAAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACACCAAGTCTTAAAATACTTAAATTTCATAGAAAAAGCCTTAAATTTTAAAGCCACTTCAAATGCTTTAA
AACTCCCTATAAAAGCAAAATCAACTCAAAAAATCTTAGGTATAAACCCGGGTGCGCATTTTGGAAGTGCCAAAAGATGG
GAAGCGAGCTATTTTGCAAGGGTAGCAAAAGAATTTAGCTCAACTCATCAAATTTTAATCTTTGGAGTAGAAAGTGAGAG
AGAAATTTGTGATGAAATTGAGCATTTTCTTTTAAAAGAAGGCATAAAGGCAAAAAATCTTTGTGGTAAAACTAGCATTT
ATACTTTATGCAAAAATATTTCTATGCTTGACTTGCTCATCACAAACGATAGTGGTCCTATGCATATAGGTGCAGTTTAT
GGGGTGAAAACGGTGGCTATTTTTGGCTCGACTAAATTTAGTCAAACTTCGCCTTGGCAAGAAAATGCTAAAATAGCACA
TTTAAATTTAACTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACACCACAAATGTATGAAAGATTTAAAGCCTG
AAATGGTAATAAATTTAGCAAGAAATTTTTCAGGAGTATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(109-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.537

100

0.66

Multiple sequence alignment