Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   UPTC5089_RS06015 Genome accession   NZ_CP176586
Coordinates   1161024..1161944 (-) Length   306 a.a.
NCBI ID   WP_410708374.1    Uniprot ID   -
Organism   Campylobacter lari strain S3:65     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1156024..1166944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5089_RS05995 (UPTC5089_01187) cysK 1156993..1157895 (-) 903 WP_039628807.1 cysteine synthase A -
  UPTC5089_RS06000 (UPTC5089_01188) - 1157992..1158294 (-) 303 WP_039619003.1 HU family DNA-binding protein -
  UPTC5089_RS06005 (UPTC5089_01189) - 1158373..1159509 (-) 1137 WP_257927981.1 hypothetical protein -
  UPTC5089_RS06010 (UPTC5089_01190) - 1159518..1161023 (-) 1506 WP_410708373.1 MBOAT family O-acyltransferase -
  UPTC5089_RS06015 (UPTC5089_01191) waaF 1161024..1161944 (-) 921 WP_410708374.1 lipopolysaccharide heptosyltransferase II Regulator
  UPTC5089_RS06020 (UPTC5089_01192) - 1161958..1163070 (-) 1113 WP_257928031.1 hypothetical protein -
  UPTC5089_RS06025 (UPTC5089_01193) - 1163079..1164581 (-) 1503 WP_410708375.1 MBOAT family O-acyltransferase -
  UPTC5089_RS06030 (UPTC5089_01194) - 1164639..1165451 (+) 813 WP_257928028.1 glycosyltransferase family 2 protein -
  UPTC5089_RS06035 (UPTC5089_01195) rfbA 1165469..1166344 (+) 876 WP_039619036.1 glucose-1-phosphate thymidylyltransferase RfbA -

Sequence

Protein


Download         Length: 306 a.a.        Molecular weight: 34808.88 Da        Isoelectric Point: 10.2942

>NTDB_id=1081168 UPTC5089_RS06015 WP_410708374.1 1161024..1161944(-) (waaF) [Campylobacter lari strain S3:65]
MNIFINLPTWLGDAVMASVAIYAIKEKYPQAKFTFYGSFVSTELFKRFENAQILVENKKQRYRQILQARKNLGKFDLAFS
FRSAFSSKIVLNLIKTKKRFYFDKNILKEEHQVLKYLNFIEKALNFKATSNALKLPIKAKSTQKILGINPGAHFGSAKRW
EASYFARVAKEFSSTHQILIFGVESEREICDEIEHFLLKEGIKAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAAY
GVKTVAVFGSTKFSQTSPWQENAKIAHLNLACMPCMQKVCPLKHHKCMKDLKPEVVINLARNFSGV

Nucleotide


Download         Length: 921 bp        

>NTDB_id=1081168 UPTC5089_RS06015 WP_410708374.1 1161024..1161944(-) (waaF) [Campylobacter lari strain S3:65]
ATGAATATTTTTATCAATCTTCCTACTTGGCTTGGCGATGCAGTAATGGCTAGTGTGGCTATTTATGCTATAAAAGAAAA
ATACCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGTACAGAGCTTTTTAAACGCTTTGAAAATGCTCAAATTT
TAGTAGAAAATAAAAAGCAAAGATATAGGCAGATTTTACAAGCTAGAAAAAATCTTGGTAAATTTGATCTAGCTTTTTCA
TTTCGCTCGGCATTTTCAAGTAAGATTGTTTTAAATCTAATCAAAACAAAGAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACATCAAGTTTTAAAATACTTAAATTTCATAGAAAAAGCTTTAAATTTTAAAGCCACTTCAAATGCTTTAA
AACTCCCTATAAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAACCCAGGTGCACATTTTGGAAGTGCGAAAAGATGG
GAAGCGAGCTATTTTGCAAGGGTAGCAAAAGAATTTAGCTCCACGCATCAAATTTTAATCTTTGGAGTAGAAAGCGAGAG
AGAAATTTGTGATGAAATTGAGCATTTTCTTTTAAAAGAAGGCATAAAAGCAAAAAATCTTTGTGGTAAAACTAGCATTT
ATACTTTATGCAAAAATATTTCTATGCTTGACTTGCTCATCACAAACGATAGTGGTCCTATGCATATAGGCGCAGCTTAT
GGGGTAAAAACGGTGGCTGTTTTTGGTTCTACTAAATTTAGTCAAACCTCGCCTTGGCAAGAAAATGCTAAAATAGCACA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACACCACAAATGCATGAAAGATTTAAAGCCTG
AAGTGGTAATAAATTTAGCAAGAAATTTTTCAGGAGTATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(109-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.856

100

0.663

Multiple sequence alignment