Detailed information NTG1081159

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: UPTC5089_RS01915
• Genome accession: NZ_CP176586
• Coordinates: 358509..359900 (+)
• Length: 463 a.a.
• NCBI ID: WP_039617665.1
• Uniprot ID: -
• Organism: Campylobacter lari strain S3:65
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 353509..364900

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
UPTC5089_RS01900 (UPTC5089_00380)	-	353894..354538 (+)	645	WP_257927667.1	HAD family hydrolase	-
UPTC5089_RS01905 (UPTC5089_00381)	nifJ	354656..358210 (+)	3555	WP_257927668.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
UPTC5089_RS01910 (UPTC5089_00382)	-	358214..358537 (+)	324	WP_039617662.1	hypothetical protein	-
UPTC5089_RS01915 (UPTC5089_00383)	ctsD	358509..359900 (+)	1392	WP_039617665.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
UPTC5089_RS01920 (UPTC5089_00384)	-	359881..360210 (+)	330	WP_214118982.1	hypothetical protein	-
UPTC5089_RS01925 (UPTC5089_00385)	-	360203..361717 (+)	1515	WP_257927669.1	GspE/PulE family protein	-
UPTC5089_RS01930 (UPTC5089_00386)	-	361714..362874 (+)	1161	WP_214118986.1	type II secretion system F family protein	-
UPTC5089_RS01935 (UPTC5089_00387)	-	362871..363623 (-)	753	WP_214126761.1	TSUP family transporter	-
UPTC5089_RS01940 (UPTC5089_00388)	-	363608..364357 (-)	750	WP_039628031.1	TIGR02757 family protein	-

Sequence

Protein

• Length: 463 a.a.
• Molecular weight: 52627.43 Da
• Isoelectric Point: 7.9611

>NTDB_id=1081159 UPTC5089_RS01915 WP_039617665.1 358509..359900(+) (ctsD) [Campylobacter lari strain S3:65]
MKKIIFLFISILTFTNVFASQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNHTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSTKEADNLVISTDKFDFWEKIS
EEIQALLDENTTKPIINTNAGIITLNATLYELTRVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNG
DDNDFIINKGGVRNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIRADKKVLSLKELGFEHEDDMF

Nucleotide

• Length: 1392 bp

>NTDB_id=1081159 UPTC5089_RS01915 WP_039617665.1 358509..359900(+) (ctsD) [Campylobacter lari strain S3:65]
ATGAAAAAAATAATATTTTTATTTATTAGTATTTTAACTTTTACAAATGTTTTTGCTTCACAGTGTCATCAGCGCTTTTT
TGATATAAGTGTAGAAAATAAAACTTCTTTGATCGAAATTTTAAATGAACTTGGTAGAGAATGTGGTTTTAGTATTATAA
TAAAAGATTCATTAGCTAGAGAAAAGTTAAATCATACTCAAAATTATTTACACATAAGAAAGATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGCTTACGAGTATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTGCACTATATAAGCTCTATTAGAGAAGGGCAAAGTATCACCAAAGCTTCAGTAGATTCAAGACCTAAAC
AAGGTGATTATGATAGTACTAAAGAAGCAGATAATCTAGTTATTAGCACAGATAAATTTGATTTTTGGGAAAAAATTTCA
GAAGAAATACAAGCTTTATTAGATGAAAATACAACTAAGCCTATTATTAATACTAATGCAGGGATTATCACTTTAAATGC
TACTTTATATGAGCTTACAAGAGTTGAAAAATATTTAAAAGATTTAAATAAAAGACTTAAAAAGCAAGTTTTAATTGATG
TAAGTATAGTTGCCGTACATTTAAATAAAAGTCATTCAAGTGGGATTAATTGGCAAGAGCTTGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATCAATAAAGGCGGTGTTAGAAATATCAATCTTAAAGCCAATGTTGAAACTAAAGCTATTTT
AAATTTATTACAAGAAAATGGCAAAACCACTGTGCTTTCTAACCCAAAACTCATGGCGCTTAATAATCAACAAGCTATTA
TTTCCATAGGTGATACGATTAATTATCAAGTAAAAGAAAGCTCTAAGGGTACTGAAAATGGTACGACCATTAGTGAGACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCTGAAATTTCAGATGATCACAAAATCATGCTTAG
AATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAATCACAGACAAAATAAACCAAGAAATATAGCGCCAGATA
CCATACAAAAAAAGCTTTCTACTGTAGTTGAAGTTGATGATGGGCAAACTTTAATTTTGGGTGGATTAATTAGTAAAAAT
ACGATTAGTAACCATAATGAAGTCAGTGCTTTATCTAAAATACCACTTTTTGGAGCTTTATTTCAAGGAAAGCAAAATTT
AGAAGATATTAGCGAAATAGTTTTTATCATCAAGCCAAGTTTAATAAGAGCTGATAAAAAAGTATTAAGCTTAAAAGAAT
TAGGTTTTGAACATGAAGATGATATGTTTTAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (269-443)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	56.838	100	0.575