Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   UPTC5084_RS06740 Genome accession   NZ_CP176585
Coordinates   1266205..1267119 (-) Length   304 a.a.
NCBI ID   WP_257942332.1    Uniprot ID   -
Organism   Campylobacter lari strain S3:34     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1265810..1307331 1266205..1267119 within 0


Gene organization within MGE regions


Location: 1265810..1307331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5084_RS06735 (UPTC5084_01323) - 1265810..1266112 (-) 303 WP_039619003.1 HU family DNA-binding protein -
  UPTC5084_RS06740 (UPTC5084_01324) waaF 1266205..1267119 (-) 915 WP_257942332.1 lipopolysaccharide heptosyltransferase II Regulator
  UPTC5084_RS06745 (UPTC5084_01325) - 1267172..1267987 (+) 816 WP_410708396.1 glycosyltransferase family 2 protein -
  UPTC5084_RS06750 (UPTC5084_01326) - 1267975..1268727 (+) 753 WP_257942373.1 glycosyltransferase family 25 protein -
  UPTC5084_RS06755 (UPTC5084_01327) - 1268960..1269724 (+) 765 WP_257942372.1 sulfotransferase family protein -
  UPTC5084_RS06760 (UPTC5084_01328) - 1269693..1269932 (+) 240 Protein_1312 glycosyltransferase family 2 protein -
  UPTC5084_RS06765 (UPTC5084_01329) - 1269972..1271183 (+) 1212 WP_257942371.1 glycosyltransferase -
  UPTC5084_RS06770 (UPTC5084_01330) - 1271187..1272125 (+) 939 WP_410708397.1 glycosyltransferase family 2 protein -
  UPTC5084_RS06775 (UPTC5084_01331) - 1272106..1273311 (+) 1206 WP_257942238.1 glycosyltransferase family 8 protein -
  UPTC5084_RS06780 (UPTC5084_01332) - 1273300..1274355 (-) 1056 WP_257942237.1 glycosyltransferase family 4 protein -
  UPTC5084_RS06785 (UPTC5084_01333) - 1274352..1275899 (-) 1548 WP_257942236.1 glycosyltransferase family 2 protein -
  UPTC5084_RS06790 (UPTC5084_01334) - 1275908..1276780 (-) 873 WP_257942235.1 lipid A biosynthesis lauroyl acyltransferase -
  UPTC5084_RS06795 (UPTC5084_01335) waaC 1276777..1277796 (-) 1020 WP_257942234.1 lipopolysaccharide heptosyltransferase I -
  UPTC5084_RS06800 (UPTC5084_01336) - 1277863..1278642 (+) 780 WP_257942233.1 3'-5' exonuclease -
  UPTC5084_RS06805 (UPTC5084_01337) galE 1278701..1279687 (+) 987 WP_257942232.1 UDP-glucose 4-epimerase GalE -
  UPTC5084_RS06810 (UPTC5084_01338) - 1279681..1281375 (+) 1695 WP_257942231.1 ABC transporter ATP-binding protein -
  UPTC5084_RS06815 (UPTC5084_01339) - 1281372..1282436 (+) 1065 WP_257942230.1 glycosyltransferase -
  UPTC5084_RS06820 (UPTC5084_01340) - 1282438..1283538 (+) 1101 WP_257942229.1 glycosyltransferase -
  UPTC5084_RS06825 (UPTC5084_01341) - 1283540..1285678 (+) 2139 WP_257942228.1 STT3 domain-containing protein -
  UPTC5084_RS06830 (UPTC5084_01342) pglA 1285675..1286802 (+) 1128 WP_257942227.1 N, N'-diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase -
  UPTC5084_RS06835 (UPTC5084_01343) pglC 1286795..1287397 (+) 603 WP_257942226.1 undecaprenyl phosphate N,N'-diacetylbacillosamine 1-phosphate transferase -
  UPTC5084_RS06840 (UPTC5084_01344) pglD 1287384..1287980 (+) 597 WP_257942225.1 UDP-N-acetylbacillosamine N-acetyltransferase -
  UPTC5084_RS06845 (UPTC5084_01345) pglE 1287977..1289137 (+) 1161 WP_257942224.1 UDP-N-acetylbacillosamine transaminase -
  UPTC5084_RS06850 (UPTC5084_01346) pglF 1289139..1290902 (+) 1764 WP_257942223.1 UDP-N-acetylglucosamine 4,6-dehydratase (configuration-retaining) -
  UPTC5084_RS06855 (UPTC5084_01347) - 1291014..1291391 (+) 378 WP_039619063.1 chemotaxis response regulator CheY -
  UPTC5084_RS06860 (UPTC5084_01348) - 1291404..1292240 (+) 837 WP_257942222.1 50S ribosomal protein L11 methyltransferase -
  UPTC5084_RS06865 (UPTC5084_01349) ftsH 1292240..1294162 (+) 1923 WP_257942221.1 ATP-dependent zinc metalloprotease FtsH -
  UPTC5084_RS06870 (UPTC5084_01350) - 1294162..1294779 (+) 618 WP_039619069.1 phosphatidylserine decarboxylase-related protein -
  UPTC5084_RS06875 (UPTC5084_01351) pssA 1294776..1295486 (+) 711 WP_039628865.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  UPTC5084_RS06880 (UPTC5084_01352) - 1295549..1296103 (+) 555 WP_039619073.1 membrane protein -
  UPTC5084_RS06890 (UPTC5084_01354) - 1296328..1297797 (+) 1470 WP_257942220.1 DNA methylase -
  UPTC5084_RS06895 (UPTC5084_01355) - 1297790..1297984 (+) 195 WP_257942219.1 hypothetical protein -
  UPTC5084_RS06900 (UPTC5084_01356) ciaB 1298003..1299838 (-) 1836 WP_257942218.1 invasion protein CiaB -
  UPTC5084_RS06905 (UPTC5084_01357) - 1299903..1300307 (+) 405 WP_039619080.1 acyl-CoA thioesterase -
  UPTC5084_RS06910 (UPTC5084_01358) - 1300372..1301301 (+) 930 WP_039619082.1 ribose-phosphate pyrophosphokinase -
  UPTC5084_RS06915 - 1301334..1302503 (-) 1170 WP_257942217.1 AAA family ATPase -
  UPTC5084_RS06920 - 1302765..1304030 (-) 1266 WP_257942216.1 hypothetical protein -
  UPTC5084_RS06925 - 1304032..1304193 (-) 162 Protein_1344 hypothetical protein -
  UPTC5084_RS06935 (UPTC5084_01361) - 1304790..1305200 (-) 411 WP_039628874.1 hypothetical protein -
  UPTC5084_RS06940 (UPTC5084_01362) ruvB 1305288..1306298 (+) 1011 WP_039619088.1 Holliday junction branch migration DNA helicase RuvB -
  UPTC5084_RS06945 (UPTC5084_01363) - 1306288..1307331 (+) 1044 WP_039628877.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 34600.66 Da        Isoelectric Point: 10.3307

>NTDB_id=1081151 UPTC5084_RS06740 WP_257942332.1 1266205..1267119(-) (waaF) [Campylobacter lari strain S3:34]
MNIFINLPTWLGDAVMASAAIYAIKEKHPQAKFTFYGSFVSTELFKRFENAQILVENKKQRYKQILKARKNLGNFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFTEKALNFKATSNALKLPIKAKSTQKILGINPGAHFGSAKRW
EASYFARVAKEFSPTHQILIFGVESEREICNEIEHYLLKEGIRAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAAY
GVKTVAVFGSTKFSQTSPWQENAKIAHLNLACMPCMQKVCPLKHHKCMKDLKPEVVINLAKTFF

Nucleotide


Download         Length: 915 bp        

>NTDB_id=1081151 UPTC5084_RS06740 WP_257942332.1 1266205..1267119(-) (waaF) [Campylobacter lari strain S3:34]
ATGAATATTTTTATCAACCTTCCTACTTGGCTTGGCGATGCAGTGATGGCTAGTGCGGCTATTTATGCTATAAAAGAAAA
ACATCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTAAGCACAGAGCTTTTTAAACGCTTTGAAAATGCTCAAATTT
TAGTAGAAAATAAAAAGCAAAGATATAAGCAAATTTTAAAAGCTAGAAAAAACCTTGGTAATTTTGATCTAGCTTTTTCG
TTTCGCTCGGCATTTTCAAGTAAGATCATTTTAAATCTAATCAAAGCAAAAAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACATCAAGTCTTAAAATACTTAAATTTCACAGAAAAAGCTTTAAATTTTAAAGCCACTTCAAATGCTTTAA
AACTCCCTATAAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAATCCAGGTGCACATTTTGGAAGTGCTAAAAGATGG
GAGGCGAGTTATTTTGCAAGGGTAGCAAAAGAATTTAGCCCAACTCATCAAATTTTAATCTTTGGAGTAGAAAGCGAGAG
AGAAATTTGTAATGAAATTGAACATTATCTTTTAAAAGAAGGCATAAGGGCAAAAAATCTTTGTGGTAAAACTAGCATTT
ATACTTTATGCAAAAATATTTCTATGCTTGATTTGCTCATTACAAACGATAGTGGTCCTATGCATATAGGCGCAGCTTAT
GGGGTAAAAACGGTGGCTGTTTTTGGCTCGACTAAATTTAGTCAAACCTCGCCTTGGCAAGAAAATGCTAAAATAGCACA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACACCACAAATGCATGAAAGATTTAAAGCCTG
AAGTGGTAATAAATTTAGCAAAAACATTTTTTTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(109-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.331

100

0.664

Multiple sequence alignment