Detailed information NTG1081141

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: UPTC5084_RS01985
• Genome accession: NZ_CP176585
• Coordinates: 368375..369766 (+)
• Length: 463 a.a.
• NCBI ID: WP_257942084.1
• Uniprot ID: -
• Organism: Campylobacter lari strain S3:34
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 363375..374766

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
UPTC5084_RS01970 (UPTC5084_00392)	-	363760..364404 (+)	645	WP_257942082.1	HAD family hydrolase	-
UPTC5084_RS01975 (UPTC5084_00393)	nifJ	364522..368076 (+)	3555	WP_257942083.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
UPTC5084_RS01980 (UPTC5084_00394)	-	368080..368403 (+)	324	WP_039628027.1	hypothetical protein	-
UPTC5084_RS01985 (UPTC5084_00395)	ctsD	368375..369766 (+)	1392	WP_257942084.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
UPTC5084_RS01990 (UPTC5084_00396)	-	369747..370076 (+)	330	WP_052241327.1	transformation system, membrane protein CtsX	-
UPTC5084_RS01995 (UPTC5084_00397)	-	370069..371583 (+)	1515	WP_257942085.1	GspE/PulE family protein	-
UPTC5084_RS02000 (UPTC5084_00398)	-	371580..372740 (+)	1161	WP_257942086.1	type II secretion system F family protein	-
UPTC5084_RS02005 (UPTC5084_00399)	-	372737..373489 (-)	753	WP_039617669.1	TSUP family transporter	-
UPTC5084_RS02010 (UPTC5084_00400)	-	373474..374223 (-)	750	WP_257942087.1	TIGR02757 family protein	-

Sequence

Protein

• Length: 463 a.a.
• Molecular weight: 52683.49 Da
• Isoelectric Point: 7.9433

>NTDB_id=1081141 UPTC5084_RS01985 WP_257942084.1 368375..369766(+) (ctsD) [Campylobacter lari strain S3:34]
MKKIIFLFISILTFTNVFASQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNYTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSTKEADNLVISTDKFDFWEKIS
EEIQALLDENTTKPIINTNAGIITLNATLYELTRVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNG
DDNDFIINKGGVRNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQTIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIRADKKVLSLKELGFEHEDDMF

Nucleotide

• Length: 1392 bp

>NTDB_id=1081141 UPTC5084_RS01985 WP_257942084.1 368375..369766(+) (ctsD) [Campylobacter lari strain S3:34]
ATGAAAAAAATAATATTTTTATTTATTAGTATTTTAACTTTTACAAATGTTTTTGCCTCACAGTGTCATCAGCGCTTTTT
TGATATAAGTGTAGAAAATAAAACTTCTTTGATCGAAATTTTAAATGAACTTGGTAGAGAATGTGGTTTTAGCATTATAA
TAAAAGATTCATTAGCCAGAGAAAAGTTAAATTATACTCAAAATTATCTACACATAAGAAAGATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGCTTACGAGTATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTGCATTATATAAGTTCTATTAGAGAAGGGCAAAGTATCACCAAAGCTTCGGTGGATTCAAGACCTAAAC
AAGGTGATTATGATAGTACTAAAGAAGCAGATAATCTAGTCATTAGCACGGATAAATTTGATTTTTGGGAAAAAATTTCA
GAAGAAATACAAGCTTTATTAGATGAAAATACAACTAAGCCTATTATTAATACTAATGCAGGAATTATCACTTTAAATGC
TACTTTATATGAGCTTACAAGAGTTGAAAAATATTTAAAAGATTTAAATAAAAGACTTAAAAAGCAAGTTTTAATTGATG
TAAGTATAGTTGCCGTACATTTAAATAAAAGTCATTCAAGTGGGATTAACTGGCAAGAGCTTGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATCAATAAAGGTGGTGTTAGAAATATCAATCTTAAAGCCAATGTTGAAACTAAAGCTATTTT
AAATTTATTACAAGAAAATGGTAAAACCACTGTGCTTTCTAACCCAAAACTTATGGCGCTTAATAATCAACAAACTATTA
TTTCCATAGGTGATACGATTAATTATCAAGTAAAAGAAAGCTCTAAGGGTACTGAAAATGGTACGACCATTAGTGAGACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCTGAAATTTCAGATGATCACAAAATCATGCTTAG
AATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAATCATAGACAAAATAAACCAAGAAATATTGCACCTGATA
CCATACAAAAAAAGCTTTCTACTGTAGTTGAAGTTGATGATGGGCAAACTTTAATTTTGGGTGGATTAATTAGTAAAAAT
ACGATTAGTAATCATAATGAAGTCAGTGCTTTATCTAAAATACCACTTTTTGGAGCTTTATTTCAAGGAAAGCAAAATTT
AGAAGATATTAGCGAAATAGTTTTTATCATCAAGCCAAGTTTAATAAGAGCTGATAAAAAAGTATTAAGCTTAAAAGAAT
TAGGTTTTGAACATGAAGATGATATGTTTTAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (269-443)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	56.624	100	0.572