Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   UPTC5083_RS06070 Genome accession   NZ_CP176584
Coordinates   1182318..1183232 (-) Length   304 a.a.
NCBI ID   WP_257936362.1    Uniprot ID   -
Organism   Campylobacter lari strain S3:26     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1177318..1188232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5083_RS06045 (UPTC5083_01201) mgtE 1177653..1178996 (+) 1344 WP_039628803.1 magnesium transporter -
  UPTC5083_RS06050 (UPTC5083_01202) tpx 1179011..1179529 (+) 519 WP_039618996.1 thiol peroxidase -
  UPTC5083_RS06055 (UPTC5083_01203) - 1179526..1180911 (-) 1386 WP_039618998.1 replicative DNA helicase -
  UPTC5083_RS06060 (UPTC5083_01204) cysK 1180924..1181826 (-) 903 WP_257936360.1 cysteine synthase A -
  UPTC5083_RS06065 (UPTC5083_01205) - 1181923..1182225 (-) 303 WP_039619003.1 HU family DNA-binding protein -
  UPTC5083_RS06070 (UPTC5083_01206) waaF 1182318..1183232 (-) 915 WP_257936362.1 lipopolysaccharide heptosyltransferase II Regulator
  UPTC5083_RS06075 (UPTC5083_01207) - 1183285..1184100 (+) 816 WP_257936363.1 glycosyltransferase family 2 protein -
  UPTC5083_RS06080 (UPTC5083_01208) - 1184088..1184831 (+) 744 WP_257936364.1 glycosyltransferase family 25 protein -
  UPTC5083_RS06085 (UPTC5083_01209) - 1184821..1185492 (-) 672 WP_257936365.1 cytidylyltransferase domain-containing protein -
  UPTC5083_RS06090 (UPTC5083_01210) neuC 1185489..1186604 (-) 1116 WP_257936366.1 UDP-N-acetylglucosamine 2-epimerase -
  UPTC5083_RS06095 (UPTC5083_01211) neuB1 1186601..1187632 (-) 1032 WP_257936367.1 sialic acid synthase -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 34571.74 Da        Isoelectric Point: 10.3076

>NTDB_id=1081133 UPTC5083_RS06070 WP_257936362.1 1182318..1183232(-) (waaF) [Campylobacter lari strain S3:26]
MNIFINLPTWLGDAVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKRFENAQILVENKKQRYKQILKAKKNLGKIDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALNFKATSNALKLPIKAKSTQKILGINPGAHFGSAKRW
EASYFARVAKEFSSTHQILIFGVESEREICDEIERFLLKEGIRAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAAY
GVKTVAVFGSTKFSQTSPWQENAKIAHLDLACMPCMQKVCPLKHHKCMKDLKPDVVINLAKTFF

Nucleotide


Download         Length: 915 bp        

>NTDB_id=1081133 UPTC5083_RS06070 WP_257936362.1 1182318..1183232(-) (waaF) [Campylobacter lari strain S3:26]
ATGAATATTTTTATCAACCTTCCTACTTGGCTTGGAGATGCGGTGATGGCTAGTGCGGCTATTTATGCTATAAAAGAAAA
ATATCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGCACAGAGCTTTTTAAACGTTTTGAAAATGCTCAAATTT
TAGTAGAAAATAAAAAACAAAGATATAAACAAATTTTAAAAGCTAAAAAAAACCTTGGTAAAATTGATCTAGCTTTTTCA
TTTCGCTCAGCATTTTCAAGCAAGATTATTTTAAATCTAATCAAAGCAAAGAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACATCAAGTTTTAAAATACTTAAATTTCATAGAAAAAGCTTTAAATTTTAAAGCCACTTCAAATGCTTTAA
AACTCCCTATAAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAACCCAGGTGCACATTTTGGAAGTGCGAAAAGATGG
GAAGCGAGCTATTTTGCAAGGGTAGCAAAAGAATTTAGCTCCACTCATCAAATTTTAATCTTTGGAGTAGAAAGTGAGAG
AGAAATTTGTGATGAAATTGAGCGTTTTCTTTTAAAAGAAGGCATAAGGGCAAAAAATCTTTGTGGTAAAACCAGCATTT
ATACTTTATGTAAAAATATTTCTATGCTTGATTTACTCATCACAAATGATAGTGGTCCTATGCATATAGGTGCAGCTTAT
GGGGTAAAAACGGTGGCTGTTTTTGGCTCGACCAAATTCAGCCAAACATCACCTTGGCAAGAAAATGCTAAAATAGCTCA
TCTTGATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACACCACAAATGCATGAAAGACTTAAAGCCTG
ATGTGGTAATAAATTTAGCAAAAACATTTTTTTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(109-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.65

100

0.668

Multiple sequence alignment