Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   FE90_RS03700 Genome accession   NZ_CP008695
Coordinates   701336..702406 (+) Length   356 a.a.
NCBI ID   WP_038433386.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain M23ND     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 696336..707406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FE90_RS03680 (FE90_0729) - 697328..698026 (+) 699 WP_002989743.1 GntR family transcriptional regulator -
  FE90_RS03685 (FE90_0730) - 698124..698456 (+) 333 WP_002989745.1 putative DNA-binding protein -
  FE90_RS03690 (FE90_0731) ffh 698471..700033 (+) 1563 WP_038433384.1 signal recognition particle protein -
  FE90_RS03695 (FE90_0732) - 700168..700866 (-) 699 WP_002993300.1 XRE family transcriptional regulator -
  FE90_RS03700 (FE90_0733) xerS 701336..702406 (+) 1071 WP_038433386.1 tyrosine recombinase XerS Machinery gene
  FE90_RS03705 (FE90_0734) - 703105..703587 (+) 483 WP_002984600.1 PASTA domain-containing protein -
  FE90_RS03710 (FE90_0735) citC 703676..704728 (+) 1053 WP_038433390.1 [citrate (pro-3S)-lyase] ligase -
  FE90_RS03715 (FE90_0736) - 704838..706232 (-) 1395 WP_038433391.1 oxaloacetate decarboxylase subunit alpha -
  FE90_RS03720 (FE90_0737) citX 706247..706825 (-) 579 WP_011888860.1 citrate lyase holo-[acyl-carrier protein] synthase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41514.59 Da        Isoelectric Point: 9.5552

>NTDB_id=108113 FE90_RS03700 WP_038433386.1 701336..702406(+) (xerS) [Streptococcus pyogenes strain M23ND]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLNTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIISLLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=108113 FE90_RS03700 WP_038433386.1 701336..702406(+) (xerS) [Streptococcus pyogenes strain M23ND]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTATAAGGCCATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAGTTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAACACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGTCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCTTATCAAGCCTTTATAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGAGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTTCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATTTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGCTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(177-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.056

100

0.801

Multiple sequence alignment