Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   UPTC5083_RS01885 Genome accession   NZ_CP176584
Coordinates   348306..349697 (+) Length   463 a.a.
NCBI ID   WP_214135007.1    Uniprot ID   A0A5L4JSS9
Organism   Campylobacter lari strain S3:26     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 343306..354697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5083_RS01870 (UPTC5083_00374) - 343691..344335 (+) 645 WP_214135005.1 HAD family hydrolase -
  UPTC5083_RS01875 (UPTC5083_00375) nifJ 344453..348007 (+) 3555 WP_115645147.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  UPTC5083_RS01880 (UPTC5083_00376) - 348029..348334 (+) 306 WP_115645149.1 hypothetical protein -
  UPTC5083_RS01885 (UPTC5083_00377) ctsD 348306..349697 (+) 1392 WP_214135007.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  UPTC5083_RS01890 (UPTC5083_00378) - 349678..350007 (+) 330 WP_214118982.1 hypothetical protein -
  UPTC5083_RS01895 (UPTC5083_00379) - 350000..351514 (+) 1515 WP_257936319.1 GspE/PulE family protein -
  UPTC5083_RS01900 (UPTC5083_00380) - 351511..352671 (+) 1161 WP_257936318.1 type II secretion system F family protein -
  UPTC5083_RS01905 (UPTC5083_00381) - 352668..353420 (-) 753 WP_257936317.1 TSUP family transporter -
  UPTC5083_RS01910 (UPTC5083_00382) - 353405..354154 (-) 750 WP_257936316.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52653.46 Da        Isoelectric Point: 7.9433

>NTDB_id=1081124 UPTC5083_RS01885 WP_214135007.1 348306..349697(+) (ctsD) [Campylobacter lari strain S3:26]
MKKIIFLFISILTFTNVFASQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNYTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSTKEADNLVISTDKFDFWEKIS
EEIQALLDENTTKPIINTNAGIITLNATLYELTRVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNG
DDNDFIINKGGVRNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIRADKKVLSLKELGFEHEDDMF

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=1081124 UPTC5083_RS01885 WP_214135007.1 348306..349697(+) (ctsD) [Campylobacter lari strain S3:26]
ATGAAAAAAATAATATTTTTATTTATTAGTATTTTAACTTTTACAAATGTTTTTGCCTCACAGTGTCATCAGCGCTTTTT
TGATATAAGTGTAGAAAATAAAACTTCTTTGATCGAAATTTTAAATGAACTTGGTAGAGAATGTGGTTTTAGTATTATAA
TAAAAGATTCATTAGCTAGAGAAAAGTTAAATTATACTCAAAATTATTTACACATAAGAAAGATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAGAATAATCTTGCTTATGAGTATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTGCACTATATAAGCTCTATTAGAGAAGGGCAAAGTATCACCAAAGCTTCAGTAGATTCAAGACCTAAAC
AAGGTGATTATGATAGTACTAAAGAAGCAGATAATCTAGTCATTAGCACGGATAAATTTGATTTTTGGGAAAAAATTTCA
GAAGAAATACAAGCTTTATTAGATGAAAATACAACTAAGCCTATTATTAATACTAATGCAGGAATTATCACTTTAAATGC
TACTTTATATGAGCTTACAAGAGTTGAAAAATATTTAAAAGATTTAAATAAAAGACTTAAAAAGCAAGTTTTAATTGATG
TAAGTATAGTTGCCGTACATTTAAATAAAAGTCATTCAAGTGGGATTAACTGGCAAGAGCTTGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATCAATAAAGGTGGTGTTAGAAATATCAATCTTAAAGCCAATGTTGAAACTAAAGCTATTTT
AAATTTATTACAAGAAAATGGCAAAACCACTGTGCTTTCTAACCCAAAACTCATGGCGCTTAATAATCAACAAGCTATTA
TTTCCATAGGTGATACGATTAATTATCAAGTAAAAGAAAGCTCTAAGGGTACTGAAAATGGTACGACCATTAGTGAAACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCTGAAATTTCAGATGATCACAAAATCATGCTTAG
AATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAATCACAGGCAAAATAAACCAAGAAATATAGCACCTGATA
CCATACAAAAAAAGCTTTCTACTGTAGTTGAAGTTGATGATGGGCAAACTTTAATTTTGGGTGGATTGATTAGTAAAAAT
ACGATTAGTAATCATAATGAAGTCAGTGCCTTATCTAAAATACCACTTTTTGGAGCTTTATTTCAAGGAAAGCAAAATTT
AGAAGATATTAGCGAAATAGTTTTTATCATCAAACCAAGTTTAATAAGAGCTGATAAAAAAGTGTTGAGTTTAAAAGAAT
TAGGTTTTGAACATGAAGATGATATGTTTTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(269-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5L4JSS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

56.838

100

0.575

Multiple sequence alignment