Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   UPTC5083_RS01530 Genome accession   NZ_CP176584
Coordinates   276458..277636 (+) Length   392 a.a.
NCBI ID   WP_257936351.1    Uniprot ID   -
Organism   Campylobacter lari strain S3:26     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 271458..282636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5083_RS01520 (UPTC5083_00304) - 272766..274403 (+) 1638 WP_410708172.1 glycosyltransferase family 2 protein -
  UPTC5083_RS01525 (UPTC5083_00305) - 274434..276461 (+) 2028 WP_257936352.1 capsular polysaccharide biosynthesis protein -
  UPTC5083_RS01530 (UPTC5083_00306) kpsS 276458..277636 (+) 1179 WP_257936351.1 capsule biosynthesis protein Regulator
  UPTC5083_RS01535 (UPTC5083_00307) - 277633..279141 (-) 1509 WP_257936350.1 SGNH/GDSL hydrolase family protein -
  UPTC5083_RS01540 (UPTC5083_00308) - 279303..280433 (+) 1131 WP_257936349.1 DUF829 domain-containing protein -
  UPTC5083_RS01545 (UPTC5083_00309) - 280443..281810 (+) 1368 WP_257936348.1 cytochrome P450 -
  UPTC5083_RS01550 (UPTC5083_00310) - 281813..282166 (+) 354 WP_039627957.1 membrane protein -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 46451.98 Da        Isoelectric Point: 10.1408

>NTDB_id=1081123 UPTC5083_RS01530 WP_257936351.1 276458..277636(+) (kpsS) [Campylobacter lari strain S3:26]
MNLSKKLKKFSGKNVLLLQGPVGGFFRKIATKIPQAKVYKVNFNGGDFFFYPFKSINYTKSLADLEDFYKKLFEEKQIQV
IIMYNDCRKVHEIAISVAKQMGIEVWIFEEGYIRPNFITFEKDGVNANSTLPREKEFYLSQKKFDKDFKFKTFSSTFRNM
AFASFLYWFFAFLFSWYFNNSLHHRSLKLFDFLPWLCSVYRKNKYKITEKSLNEKILSLKQKYFLAILQVHNDTQLSHHY
KKTTEKFIEEVIISFANHAKAKSYLVFKHHPMDRGYRDYTKLIEDLSLKYNVEGRILYIHDLHLPTLLINTRGTIVINST
VGLSALYHNSPLKVMGKAFYDIEGLTYQKSLHTFWKECRAYKPDVVLHAKFRNYVIYKTQVNGNFFKNTSLD

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=1081123 UPTC5083_RS01530 WP_257936351.1 276458..277636(+) (kpsS) [Campylobacter lari strain S3:26]
ATGAATTTAAGTAAAAAGTTAAAAAAATTTTCTGGTAAAAATGTTTTATTACTCCAAGGTCCTGTGGGTGGATTTTTTCG
TAAAATTGCTACAAAAATTCCACAAGCTAAGGTTTATAAAGTAAATTTTAATGGTGGAGATTTTTTCTTTTATCCTTTTA
AAAGTATTAATTACACTAAAAGCTTGGCTGATCTTGAAGACTTTTATAAAAAGCTTTTTGAAGAAAAACAAATTCAAGTT
ATCATTATGTATAATGATTGTAGAAAAGTGCATGAAATAGCCATTAGCGTTGCTAAGCAAATGGGTATTGAAGTATGGAT
TTTTGAAGAAGGTTATATAAGACCAAACTTCATTACTTTTGAAAAAGATGGAGTGAATGCAAACTCGACCTTACCAAGAG
AAAAAGAATTTTATCTAAGTCAGAAAAAATTTGACAAAGATTTTAAATTTAAAACTTTCTCAAGTACTTTTAGAAATATG
GCCTTTGCTTCATTTTTATACTGGTTTTTTGCTTTTTTATTTTCTTGGTATTTTAATAATTCTTTACACCATAGAAGTTT
AAAATTATTTGACTTTTTACCTTGGCTTTGCTCAGTATATAGAAAAAACAAATACAAAATCACAGAAAAAAGTTTAAATG
AAAAAATTCTTTCCCTAAAACAAAAGTATTTTTTAGCTATTTTGCAAGTGCATAATGACACTCAACTTTCTCATCATTAT
AAAAAAACTACAGAAAAATTTATAGAAGAGGTAATCATCTCTTTTGCTAATCATGCTAAAGCAAAGTCATATCTAGTTTT
TAAACATCATCCTATGGACCGTGGCTATAGGGACTATACTAAGCTTATAGAAGATTTGAGTTTAAAATACAATGTCGAGG
GTAGAATTTTATATATACATGACTTACACTTACCTACACTCTTAATCAATACAAGAGGTACTATAGTGATAAATAGCACA
GTAGGGCTTTCTGCTTTATACCACAACAGCCCCTTAAAAGTTATGGGAAAAGCCTTTTATGATATAGAAGGCCTAACGTA
TCAAAAAAGCTTGCATACTTTTTGGAAAGAATGCAGAGCATATAAACCTGATGTGGTTTTGCATGCTAAATTTAGAAATT
ATGTGATATATAAAACCCAAGTTAATGGGAATTTTTTCAAAAATACTAGTTTAGATTAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(80-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.519

100

0.62

Multiple sequence alignment