Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   UPTC5079_RS06380 Genome accession   NZ_CP176583
Coordinates   1244957..1245871 (-) Length   304 a.a.
NCBI ID   WP_257938846.1    Uniprot ID   -
Organism   Campylobacter lari strain MO18     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1239957..1250871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5079_RS06355 (UPTC5079_001258) mgtE 1240294..1241637 (+) 1344 WP_115646004.1 magnesium transporter -
  UPTC5079_RS06360 (UPTC5079_001259) tpx 1241649..1242167 (+) 519 WP_257938843.1 thiol peroxidase -
  UPTC5079_RS06365 (UPTC5079_001260) - 1242164..1243549 (-) 1386 WP_257938844.1 replicative DNA helicase -
  UPTC5079_RS06370 (UPTC5079_001261) cysK 1243562..1244464 (-) 903 WP_257938845.1 cysteine synthase A -
  UPTC5079_RS06375 (UPTC5079_001262) - 1244562..1244864 (-) 303 WP_039619003.1 HU family DNA-binding protein -
  UPTC5079_RS06380 (UPTC5079_001263) waaF 1244957..1245871 (-) 915 WP_257938846.1 lipopolysaccharide heptosyltransferase II Regulator
  UPTC5079_RS06385 - 1245929..1246354 (+) 426 WP_373274215.1 glycosyltransferase family 2 protein -
  UPTC5079_RS06390 - 1246417..1246761 (+) 345 WP_373274216.1 hypothetical protein -
  UPTC5079_RS06395 (UPTC5079_001265) - 1246733..1248100 (+) 1368 WP_257938847.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  UPTC5079_RS06400 (UPTC5079_001266) gmd 1248101..1249240 (+) 1140 WP_257938848.1 GDP-mannose 4,6-dehydratase -
  UPTC5079_RS06405 (UPTC5079_001267) - 1249233..1250018 (+) 786 WP_257938849.1 FkbM family methyltransferase -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 34641.77 Da        Isoelectric Point: 10.3079

>NTDB_id=1081116 UPTC5079_RS06380 WP_257938846.1 1244957..1245871(-) (waaF) [Campylobacter lari strain MO18]
MNIFINLPTWLGDAVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKRFENAQILVENKKQRYKQILKARKNLGKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALNFKATSNSLKLPIKAKSTQKILGINPGAHFGSAKRW
EASYFARVAKEFSSTHQILIFGVESEREICDEIEHFLLKEGIKSKNLCGKTSIYTLCKNISVLDLLITNDSGPMHIGAVY
GVKTVAIFGSTKFSQTSPWQENAKIAHLNLACMPCMQKVCPLKHHKCMKDLKPEVVINLAKTFF

Nucleotide


Download         Length: 915 bp        

>NTDB_id=1081116 UPTC5079_RS06380 WP_257938846.1 1244957..1245871(-) (waaF) [Campylobacter lari strain MO18]
ATGAATATTTTTATCAACCTTCCTACTTGGCTTGGCGATGCGGTGATGGCTAGTGCGGCTATTTATGCTATAAAAGAAAA
ATACCCTCAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGCACAGAGCTTTTTAAACGCTTTGAAAATGCTCAAATTT
TAGTAGAAAATAAAAAGCAAAGATATAAGCAAATTTTAAAAGCTAGAAAAAATCTTGGTAAATTCGATCTAGCTTTTTCA
TTTCGCTCGGCATTTTCAAGTAAGATCATTTTAAATCTAATCAAAGCAAAAAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACACCAAGTCTTAAAATACTTAAATTTCATAGAAAAGGCCTTAAATTTTAAAGCTACTTCAAATTCTTTAA
AACTCCCTATAAAAGCAAAATCAACTCAAAAAATCTTAGGTATAAACCCGGGTGCGCATTTTGGAAGTGCTAAAAGATGG
GAAGCGAGCTATTTTGCAAGGGTAGCAAAAGAATTTAGCTCAACTCATCAAATTTTAATCTTTGGAGTAGAAAGTGAGAG
AGAAATTTGTGATGAAATTGAGCATTTTCTTTTAAAAGAAGGTATCAAATCAAAAAATCTTTGTGGTAAAACTAGTATTT
ATACTTTATGTAAAAATATTTCTGTACTTGATTTGCTCATCACAAACGATAGTGGTCCTATGCATATAGGTGCAGTTTAT
GGGGTGAAAACGGTGGCTATTTTTGGCTCGACTAAATTTAGTCAAACTTCGCCTTGGCAAGAAAATGCTAAAATAGCACA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACACCACAAATGTATGAAAGATTTAAAGCCTG
AAGTGGTAATAAATTTAGCAAAAACATTTTTTTAG

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(109-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.605

100

0.678

Multiple sequence alignment