Detailed information NTG1081107

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: UPTC5079_RS02015
• Genome accession: NZ_CP176583
• Coordinates: 379106..380497 (+)
• Length: 463 a.a.
• NCBI ID: WP_257938999.1
• Uniprot ID: -
• Organism: Campylobacter lari strain MO18
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 374106..385497

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
UPTC5079_RS02000 (UPTC5079_000397)	-	374491..375135 (+)	645	WP_214135005.1	HAD family hydrolase	-
UPTC5079_RS02005 (UPTC5079_000398)	nifJ	375253..378807 (+)	3555	WP_257939000.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
UPTC5079_RS02010 (UPTC5079_000399)	-	378811..379134 (+)	324	WP_039617662.1	hypothetical protein	-
UPTC5079_RS02015 (UPTC5079_000400)	ctsD	379106..380497 (+)	1392	WP_257938999.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
UPTC5079_RS02020 (UPTC5079_000401)	-	380478..380807 (+)	330	WP_214118982.1	hypothetical protein	-
UPTC5079_RS02025 (UPTC5079_000402)	-	380800..382314 (+)	1515	WP_257938998.1	GspE/PulE family protein	-
UPTC5079_RS02030 (UPTC5079_000403)	-	382311..383471 (+)	1161	WP_257938997.1	type II secretion system F family protein	-
UPTC5079_RS02035 (UPTC5079_000404)	-	383468..384220 (-)	753	WP_087689560.1	TSUP family transporter	-
UPTC5079_RS02040 (UPTC5079_000405)	-	384205..384954 (-)	750	WP_214135009.1	TIGR02757 family protein	-

Sequence

Protein

• Length: 463 a.a.
• Molecular weight: 52639.44 Da
• Isoelectric Point: 7.9433

>NTDB_id=1081107 UPTC5079_RS02015 WP_257938999.1 379106..380497(+) (ctsD) [Campylobacter lari strain MO18]
MKKIIFLFISILTFTNVFASQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNYTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSTKEADNLVISTDKFDFWEKIS
EEIQALLDENTTKPIINTNAGVITLNATLYELTRVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNG
DDNDFIINKGGVRNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIRADKKVLSLKELGFEHEDDMF

Nucleotide

• Length: 1392 bp

>NTDB_id=1081107 UPTC5079_RS02015 WP_257938999.1 379106..380497(+) (ctsD) [Campylobacter lari strain MO18]
ATGAAAAAAATAATATTTTTATTTATTAGTATTTTAACTTTTACAAATGTTTTTGCCTCACAGTGTCATCAGCGCTTTTT
TGATATAAGTGTAGAAAATAAAACTTCTTTGATCGAAATTTTAAATGAACTTGGTAGAGAATGTGGTTTTAGTATTATAA
TAAAAGATTCATTAGCTAGAGAAAAGTTAAATTATACTCAAAATTATTTACACATAAGAAAAATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGCTTACGAGTATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTGCATTATATAAGCTCTATTAGAGAAGGGCAAAGCATTACTAAAGCTTCAGTGGATTCAAGACCTAAAC
AGGGCGATTATGATAGTACTAAAGAAGCAGATAATCTAGTCATTAGCACGGATAAATTTGATTTTTGGGAAAAAATTTCA
GAAGAAATACAAGCTTTATTAGATGAAAATACAACTAAGCCTATTATTAATACTAATGCAGGAGTTATTACTTTAAATGC
TACTTTATATGAGCTTACAAGAGTTGAAAAATATTTAAAAGATTTAAATAAAAGACTTAAAAAGCAAGTTTTAATTGATG
TAAGTATAGTTGCTGTACATTTAAATAAAAGTCATTCAAGTGGGATTAACTGGCAAGAGCTTGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATCAATAAAGGTGGTGTTAGAAATATCAATCTTAAAGCCAATGTTGAAACTAAAGCTATTTT
AAATTTATTACAAGAAAATGGTAAAACCACTGTGCTTTCTAACCCAAAACTCATGGCACTTAATAATCAACAAGCTATTA
TTTCCATAGGTGATACGATTAATTATCAAGTAAAAGAAAGCTCTAAGGGTACTGAAAATGGTACGACCATTAGTGAGACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCTGAAATTTCAGATGATCACAAAATCATGCTTAG
AATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAACCATAGACAAAATAAACCAAGAAATATAGCACCTGATA
CCATACAAAAAAAGCTTTCTACTGTAGTTGAAGTTGATGATGGGCAAACTTTAATTTTGGGTGGATTGATTAGTAAAAAT
ACGATTAGTAATCATAATGAAGTCAGTGCCTTATCTAAAATACCACTTTTTGGAGCTTTATTTCAAGGAAAGCAAAATTT
AGAAGATATTAGCGAAATAGTTTTTATCATCAAACCAAGTTTAATAAGAGCTGATAAAAAAGTATTAAGCTTAAAAGAAT
TAGGTTTTGAACATGAAGATGATATGTTTTAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (269-443)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	56.838	100	0.575