Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   UPTC5079_RS01650 Genome accession   NZ_CP176583
Coordinates   307342..308520 (+) Length   392 a.a.
NCBI ID   WP_257938596.1    Uniprot ID   -
Organism   Campylobacter lari strain MO18     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 302342..313520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5079_RS01635 (UPTC5079_000325) cysC 303529..304119 (+) 591 WP_257938593.1 adenylyl-sulfate kinase -
  UPTC5079_RS01640 (UPTC5079_000326) - 304112..305287 (+) 1176 WP_257938594.1 sulfotransferase family protein -
  UPTC5079_RS01645 (UPTC5079_000327) - 305318..307345 (+) 2028 WP_257938595.1 capsular polysaccharide biosynthesis protein -
  UPTC5079_RS01650 (UPTC5079_000328) kpsS 307342..308520 (+) 1179 WP_257938596.1 capsule biosynthesis protein Regulator
  UPTC5079_RS01655 (UPTC5079_000329) - 308517..310025 (-) 1509 WP_257938597.1 SGNH/GDSL hydrolase family protein -
  UPTC5079_RS01660 (UPTC5079_000330) - 310189..311319 (+) 1131 WP_257938598.1 DUF829 domain-containing protein -
  UPTC5079_RS01665 (UPTC5079_000331) - 311329..312702 (+) 1374 WP_257938599.1 cytochrome P450 -
  UPTC5079_RS01670 (UPTC5079_000332) - 312699..313052 (+) 354 WP_039627957.1 membrane protein -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 46388.03 Da        Isoelectric Point: 10.1934

>NTDB_id=1081106 UPTC5079_RS01650 WP_257938596.1 307342..308520(+) (kpsS) [Campylobacter lari strain MO18]
MNLSKKLKKFSGKNVLLLQGPVGGFFRKIAAKIPKAKVYKVNFNGGDFFFYPFKSINYTKSLVELENFYKKLFEEKQIQV
IIMYNDCRKVHEIAINVAKQMGIEVWIFEEGYIRPNFITFEKDGVNANSTLPREKEFYLSQKKFDKDFKFKTFSSTFKNM
AFASFLYWLFAFLFSWYFNNSLHHRSLKLFDFLPWFCSVYRKNKYKITEKILNEKILSLKQKYFLAVLQVHNDTQLSHHY
KKTTEKFIEEVIISFANHAKAKSYLVFKHHPMDRGYRDYTKLIEDLSLKYNVEGRILYVHDLHLPTLLINARGTIVINST
VGLSALYHNSPLKVMGKAFYDVEGLTYQKSLHTFWKECRAYKPDAVLHAKFRNYVIYKTQVNGNFFKNTSLD

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=1081106 UPTC5079_RS01650 WP_257938596.1 307342..308520(+) (kpsS) [Campylobacter lari strain MO18]
ATGAATTTAAGTAAAAAGTTAAAAAAATTTTCTGGTAAAAATGTTTTATTGCTCCAAGGGCCTGTAGGGGGATTTTTTCG
TAAAATTGCTGCAAAAATTCCAAAAGCTAAGGTTTATAAAGTAAATTTTAATGGTGGAGATTTTTTCTTTTATCCTTTTA
AAAGTATTAATTATACTAAAAGCTTAGTCGAGCTTGAAAACTTTTATAAAAAGCTTTTTGAAGAAAAACAAATTCAAGTT
ATCATTATGTATAATGATTGTAGGAAAGTTCATGAAATAGCCATTAATGTTGCTAAGCAAATGGGTATTGAAGTATGGAT
TTTTGAAGAAGGTTATATAAGACCAAACTTCATTACTTTTGAAAAAGATGGAGTGAATGCAAACTCCACTCTGCCAAGAG
AAAAAGAATTTTATCTAAGTCAGAAAAAATTTGATAAAGATTTTAAATTTAAAACTTTCTCAAGTACTTTTAAAAATATG
GCCTTTGCTTCATTTTTATACTGGCTTTTTGCTTTTTTATTTTCTTGGTATTTTAATAATTCTTTACATCATAGAAGTTT
AAAATTATTTGACTTTTTACCTTGGTTTTGCTCAGTATATAGAAAAAATAAATACAAAATCACAGAAAAAATTTTAAATG
AAAAAATTCTTTCCCTAAAACAAAAGTATTTTTTAGCTGTTTTACAAGTGCATAATGATACTCAACTATCTCATCATTAT
AAAAAAACTACAGAAAAATTTATAGAAGAAGTGATCATCTCTTTTGCTAATCATGCCAAAGCAAAGTCTTATTTAGTTTT
TAAGCACCATCCTATGGATCGTGGCTATAGGGACTATACTAAACTTATAGAAGATTTGAGCTTAAAATACAATGTCGAGG
GTAGAATTTTATATGTACATGACTTACACTTACCTACACTTTTAATCAATGCAAGAGGTACTATAGTTATAAATAGCACA
GTAGGACTTTCTGCTTTATATCACAATAGTCCTTTAAAAGTTATGGGAAAAGCCTTTTATGATGTAGAAGGTTTGACTTA
TCAAAAAAGCTTGCATACTTTTTGGAAAGAATGCAGAGCATATAAACCTGATGCAGTTTTACATGCTAAATTTAGAAATT
ATGTGATATATAAAACCCAAGTCAATGGGAATTTTTTCAAAAATACTAGTTTAGATTAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(80-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.532

100

0.63

Multiple sequence alignment