Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   UPTC5055_RS06405 Genome accession   NZ_CP176582
Coordinates   1242134..1243054 (-) Length   306 a.a.
NCBI ID   WP_410689793.1    Uniprot ID   -
Organism   Campylobacter lari strain 257     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1237134..1248054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5055_RS06385 (UPTC5055_001261) cysK 1238103..1239005 (-) 903 WP_126341033.1 cysteine synthase A -
  UPTC5055_RS06390 (UPTC5055_001262) - 1239102..1239404 (-) 303 WP_039619003.1 HU family DNA-binding protein -
  UPTC5055_RS06395 (UPTC5055_001263) - 1239483..1240619 (-) 1137 WP_126341034.1 hypothetical protein -
  UPTC5055_RS06400 (UPTC5055_001264) - 1240628..1242133 (-) 1506 WP_410689792.1 MBOAT family O-acyltransferase -
  UPTC5055_RS06405 (UPTC5055_001265) waaF 1242134..1243054 (-) 921 WP_410689793.1 lipopolysaccharide heptosyltransferase II Regulator
  UPTC5055_RS06410 (UPTC5055_001266) - 1243068..1244180 (-) 1113 WP_126341037.1 hypothetical protein -
  UPTC5055_RS06415 (UPTC5055_001267) - 1244189..1245691 (-) 1503 WP_410689794.1 MBOAT family O-acyltransferase -
  UPTC5055_RS06420 (UPTC5055_001268) - 1245749..1246561 (+) 813 WP_257943786.1 glycosyltransferase family 2 protein -
  UPTC5055_RS06425 (UPTC5055_001269) rfbA 1246579..1247454 (+) 876 WP_039619036.1 glucose-1-phosphate thymidylyltransferase RfbA -

Sequence

Protein


Download         Length: 306 a.a.        Molecular weight: 34801.04 Da        Isoelectric Point: 10.2239

>NTDB_id=1081099 UPTC5055_RS06405 WP_410689793.1 1242134..1243054(-) (waaF) [Campylobacter lari strain 257]
MNIFINLPTWLGDAVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKCFENAQILVENKKQRYKQILQARKNLGKFDLAFS
FRSAFSSKIILNLIKVKKRFYFDKNILKEEHQVLKYLNFIEKALNFKATSNSLKLPIKAKSTQKILGINPGAHFGSAKRW
EAIYFARVAKEFSSTHQILIFGVESEREICDEIEQFLLKEGIRAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAVY
GVKTVAVFGSTKFSQTSPWQENAKIAHLNLVCMPCMQKVCPLKHHKCMKDLKPDVVINLAKKFSGV

Nucleotide


Download         Length: 921 bp        

>NTDB_id=1081099 UPTC5055_RS06405 WP_410689793.1 1242134..1243054(-) (waaF) [Campylobacter lari strain 257]
ATGAATATTTTTATCAACCTTCCTACTTGGCTTGGCGATGCAGTAATGGCTAGTGCGGCTATTTATGCTATAAAAGAAAA
ATACCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTAAGTACAGAGCTTTTTAAATGCTTTGAAAATGCTCAAATTT
TAGTAGAAAATAAAAAACAAAGATATAAGCAAATTTTACAAGCTAGAAAAAACCTTGGTAAATTTGATCTAGCTTTTTCG
TTTCGCTCGGCATTTTCAAGTAAGATCATTTTAAATCTAATTAAAGTAAAAAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACATCAAGTCTTAAAGTACTTAAATTTCATAGAAAAAGCCTTAAATTTTAAAGCCACTTCAAATTCTTTAA
AACTCCCTATAAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAATCCAGGCGCGCATTTTGGAAGTGCGAAAAGATGG
GAAGCAATCTATTTTGCAAGGGTAGCAAAAGAATTTAGCTCCACGCATCAAATTTTAATCTTTGGAGTAGAAAGTGAGAG
AGAAATTTGTGATGAAATTGAACAATTTCTTCTAAAAGAAGGCATAAGGGCAAAAAATCTTTGTGGTAAAACTAGCATTT
ATACTTTATGTAAAAATATTTCTATGCTTGATTTACTAATCACAAACGATAGTGGTCCTATGCATATAGGCGCAGTTTAT
GGAGTAAAAACGGTGGCCGTTTTTGGCTCTACTAAATTTAGTCAAACCTCACCTTGGCAAGAAAATGCTAAAATAGCACA
CTTAAATTTAGTTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACATCATAAATGTATGAAAGACTTAAAGCCTG
ATGTGGTAATAAATTTAGCAAAAAAATTTTCAGGAGTATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(109-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.952

100

0.66

Multiple sequence alignment