Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   UPTC5055_RS04180 Genome accession   NZ_CP176582
Coordinates   794631..795599 (-) Length   322 a.a.
NCBI ID   WP_236681668.1    Uniprot ID   -
Organism   Campylobacter lari strain 257     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 789631..800599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5055_RS04160 (UPTC5055_000823) - 789870..791912 (-) 2043 WP_308400907.1 TonB-dependent receptor domain-containing protein -
  UPTC5055_RS04165 (UPTC5055_000824) - 791936..792865 (-) 930 WP_257943267.1 siderophore ABC transporter substrate-binding protein -
  UPTC5055_RS04170 (UPTC5055_000825) - 792945..793706 (-) 762 WP_257943268.1 ABC transporter ATP-binding protein -
  UPTC5055_RS04175 (UPTC5055_000826) - 793703..794638 (-) 936 WP_257943269.1 iron chelate uptake ABC transporter family permease subunit -
  UPTC5055_RS04180 (UPTC5055_000827) ceuB 794631..795599 (-) 969 WP_236681668.1 ABC transporter permease Machinery gene
  UPTC5055_RS04185 (UPTC5055_000828) flgA 796579..797247 (+) 669 WP_069106955.1 flagellar basal body P-ring formation chaperone FlgA -
  UPTC5055_RS04190 (UPTC5055_000829) - 797244..797822 (+) 579 WP_039626038.1 UbiX family flavin prenyltransferase -
  UPTC5055_RS04195 (UPTC5055_000830) coaD 797822..798301 (+) 480 WP_257943270.1 pantetheine-phosphate adenylyltransferase -
  UPTC5055_RS04200 (UPTC5055_000831) tmk 798292..798876 (+) 585 WP_039626042.1 dTMP kinase -
  UPTC5055_RS04205 (UPTC5055_000832) hisS 798869..800095 (+) 1227 WP_257943271.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35855.69 Da        Isoelectric Point: 9.2495

>NTDB_id=1081091 UPTC5055_RS04180 WP_236681668.1 794631..795599(-) (ceuB) [Campylobacter lari strain 257]
MMIKYLFGISFLIPTLIFLSLISLFVGVKDISIFNILSLTQEEKEILTIVRLPRLISIIITGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILICMLFFSGFNFIYQIFIAFIFTLIGSVIFIQILQKIKLKEIVFVPLIGLMFGGIINSITTFFA
YENNMIQNIQGWLQGNFSSIMIGNYEILFISIPIFIIAYFFANKITIVGMGKDVSLNLGVSYNTILYIGLIIISIVVSIV
VLTIGVIPFLGLVIPNIVSIYKGDNLKAVLFYTAILGAVFLLVCDILSRTIIYPFEIPINLTVGIIGGILFVWILLRKKT
NA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=1081091 UPTC5055_RS04180 WP_236681668.1 794631..795599(-) (ceuB) [Campylobacter lari strain 257]
ATTATGATTAAATATTTATTTGGAATTAGTTTTTTAATACCTACATTAATATTTCTATCCTTGATTAGTCTTTTTGTAGG
CGTTAAAGATATTTCTATATTTAATATTCTATCTTTAACTCAAGAAGAAAAAGAAATTTTAACAATTGTTAGACTACCAA
GATTAATTTCCATTATCATTACTGGAATGAGCTTGAGTATATGCGGTTTGATTATGCAGCAACTTACTCAAAATAAATTT
GTATCTCCTACAACCGCAGGGACTATGGATTGTGCTAAATTTGGAATTTTAATTTGTATGTTATTTTTTAGTGGATTTAA
TTTTATTTATCAAATTTTTATAGCTTTTATTTTTACTCTTATTGGTAGTGTTATTTTTATCCAAATACTTCAAAAAATAA
AACTAAAAGAAATTGTTTTTGTTCCTTTGATTGGATTAATGTTTGGAGGTATTATTAACTCTATTACGACTTTTTTTGCT
TATGAAAACAATATGATACAAAATATTCAAGGCTGGCTACAAGGTAATTTTTCATCTATCATGATAGGAAATTATGAAAT
ATTATTTATTAGTATTCCTATTTTTATCATTGCATATTTTTTTGCTAATAAAATCACCATTGTTGGCATGGGTAAAGATG
TTTCCTTAAATTTGGGCGTCTCATACAATACTATTTTATATATAGGGTTAATTATAATTTCCATTGTGGTTTCTATTGTG
GTTTTAACAATAGGGGTAATACCTTTTTTAGGTCTTGTTATACCAAACATAGTTTCAATATATAAAGGTGATAATTTAAA
AGCTGTTCTTTTTTATACCGCAATACTTGGAGCCGTGTTTTTATTAGTATGCGATATTTTATCAAGGACTATTATTTATC
CATTTGAAATTCCTATAAATTTAACCGTTGGCATTATTGGAGGTATTTTATTTGTTTGGATTTTACTAAGAAAGAAAACA
AATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(16-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

61.801

100

0.618

Multiple sequence alignment