Detailed information NTG1081088

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: UPTC5055_RS01965
• Genome accession: NZ_CP176582
• Coordinates: 372001..373392 (+)
• Length: 463 a.a.
• NCBI ID: WP_126340702.1
• Uniprot ID: -
• Organism: Campylobacter lari strain 257
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 367001..378392

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
UPTC5055_RS01950 (UPTC5055_000387)	-	367386..368030 (+)	645	WP_039617658.1	HAD family hydrolase	-
UPTC5055_RS01955 (UPTC5055_000388)	nifJ	368148..371702 (+)	3555	WP_257943395.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
UPTC5055_RS01960 (UPTC5055_000389)	-	371769..372029 (+)	261	WP_126340701.1	hypothetical protein	-
UPTC5055_RS01965 (UPTC5055_000390)	ctsD	372001..373392 (+)	1392	WP_126340702.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
UPTC5055_RS01970 (UPTC5055_000391)	-	373373..373702 (+)	330	WP_126340703.1	hypothetical protein	-
UPTC5055_RS01975 (UPTC5055_000392)	-	373695..375209 (+)	1515	WP_257943396.1	GspE/PulE family protein	-
UPTC5055_RS01980 (UPTC5055_000393)	-	375206..376366 (+)	1161	WP_257943397.1	type II secretion system F family protein	-
UPTC5055_RS01985 (UPTC5055_000394)	-	376363..377115 (-)	753	WP_114640101.1	TSUP family transporter	-
UPTC5055_RS01990 (UPTC5055_000395)	-	377100..377849 (-)	750	WP_039625453.1	TIGR02757 family protein	-

Sequence

Protein

• Length: 463 a.a.
• Molecular weight: 52555.37 Da
• Isoelectric Point: 8.3792

>NTDB_id=1081088 UPTC5055_RS01965 WP_126340702.1 372001..373392(+) (ctsD) [Campylobacter lari strain 257]
MKKIIFLFISVLTFTNVFASQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNHTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSTKEADNLVISTDKFDFWEKIS
EEIQALLDENTTKPIINTNAGIITLNATLYELTRVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNG
DDSDFIINKGGVRNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISEA
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIRADKKVLSLKELGFEHEDNMF

Nucleotide

• Length: 1392 bp

>NTDB_id=1081088 UPTC5055_RS01965 WP_126340702.1 372001..373392(+) (ctsD) [Campylobacter lari strain 257]
ATGAAAAAAATAATATTTTTATTTATTAGTGTTTTAACTTTTACAAATGTTTTTGCTTCACAGTGTCATCAGCGCTTTTT
TGATATAAGCGTAGAAAATAAAACTTCTTTGATTGAAATTTTAAATGAACTTGGTAGAGAATGTGGTTTTAGCATTATAA
TAAAAGATTCATTAGCTAGAGAAAAGTTAAATCATACTCAAAATTATTTACACATAAGAAAAATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGCTTATGAATATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTGCATTATATAAGTTCTATTAGAGAAGGGCAAAGTATCACCAAAGCTTCGGTTGATTCAAGACCTAAAC
AAGGTGATTATGATAGTACTAAAGAAGCAGATAATCTAGTCATTAGCACAGATAAATTTGATTTTTGGGAAAAAATTTCA
GAAGAAATACAAGCTTTATTAGATGAAAATACAACTAAGCCTATTATTAATACTAATGCAGGAATTATCACTTTAAATGC
TACTTTATATGAGCTTACAAGAGTTGAAAAATATCTAAAAGATTTAAATAAAAGACTTAAAAAGCAAGTTTTAATTGATG
TAAGTATAGTTGCTGTACATTTAAATAAAAGTCATTCAAGTGGGATTAACTGGCAAGAGCTTGCTTTTAAACTCAATGGA
GATGATAGTGATTTTATAATCAATAAAGGTGGTGTTAGAAATATCAATCTTAAAGCCAATGTTGAAACTAAAGCTATTTT
AAATTTATTACAAGAAAATGGCAAAACCACTGTGCTTTCTAACCCAAAACTCATGGCGCTTAATAATCAACAAGCTATTA
TTTCCATAGGTGATACGATTAATTATCAAGTAAAAGAAAGTTCCAAGGGCACTGAAAATGGTACGACCATTAGTGAAGCT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTACCTGAAATTTCAGATGATCATAAAATCATGCTTAG
AATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAATCATAGACAAAATAAGCCAAGAAATATAGCACCTGATA
CCATACAAAAAAAGCTTTCTACTGTAGTTGAAGTTGATGATGGGCAAACTTTAATTTTGGGTGGATTAATTAGTAAAAAT
ACGATTAGTAATCATAACGAAGTAAGTGCTTTATCTAAAATACCACTTTTTGGAGCTTTATTTCAAGGAAAGCAAAATTT
AGAAGATATTAGCGAAATAGTTTTTATCATCAAGCCAAGTTTAATAAGAGCTGATAAAAAAGTATTAAGCTTAAAAGAAT
TAGGTTTTGAACATGAAGATAATATGTTTTAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (269-443)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	56.41	100	0.57