Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   UPTC5050_RS06430 Genome accession   NZ_CP176581
Coordinates   1238059..1238973 (-) Length   304 a.a.
NCBI ID   WP_257937713.1    Uniprot ID   -
Organism   Campylobacter lari strain S3:81     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1233059..1243973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5050_RS06405 (UPTC5050_1254) mgtE 1233394..1234737 (+) 1344 WP_039628803.1 magnesium transporter -
  UPTC5050_RS06410 (UPTC5050_1255) tpx 1234751..1235269 (+) 519 WP_039618996.1 thiol peroxidase -
  UPTC5050_RS06415 (UPTC5050_1256) - 1235266..1236651 (-) 1386 WP_257937715.1 replicative DNA helicase -
  UPTC5050_RS06420 (UPTC5050_1257) cysK 1236664..1237566 (-) 903 WP_257937714.1 cysteine synthase A -
  UPTC5050_RS06425 (UPTC5050_1258) - 1237664..1237966 (-) 303 WP_039619003.1 HU family DNA-binding protein -
  UPTC5050_RS06430 (UPTC5050_1259) waaF 1238059..1238973 (-) 915 WP_257937713.1 glycosyltransferase family 9 protein Regulator
  UPTC5050_RS06435 (UPTC5050_1260) - 1239026..1239841 (+) 816 WP_257937712.1 glycosyltransferase family 2 protein -
  UPTC5050_RS06440 (UPTC5050_1261) - 1239829..1240572 (+) 744 WP_257937711.1 glycosyltransferase family 25 protein -
  UPTC5050_RS06445 (UPTC5050_1262) - 1240562..1241233 (-) 672 WP_257937710.1 cytidylyltransferase domain-containing protein -
  UPTC5050_RS06450 (UPTC5050_1263) neuC 1241230..1242345 (-) 1116 WP_257937709.1 UDP-N-acetylglucosamine 2-epimerase -
  UPTC5050_RS06455 (UPTC5050_1264) neuB1 1242342..1243373 (-) 1032 WP_257937708.1 sialic acid synthase -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 34620.77 Da        Isoelectric Point: 10.2827

>NTDB_id=1081080 UPTC5050_RS06430 WP_257937713.1 1238059..1238973(-) (waaF) [Campylobacter lari strain S3:81]
MNIFINLPTWLGDAVMASVAIYAIKEKYPQAKFTFYGSFVSTELFKRFENAQILVENKKQRYKQILQARKNLGKFDLAFS
FRSAFSSKIVLNLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALNFKATSSALKLPIKAKSTQKILGINAGAHFGSAKRW
EAIYFARVAKEFSSTHQILIFGVESEREICDEIERFLLKEGIRAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAAY
GVKTVAVFGSTKFSQTSPWQENAKIAHLDLACMPCMQKVCPLKHHKCMKDLKPDVVINLAKTFF

Nucleotide


Download         Length: 915 bp        

>NTDB_id=1081080 UPTC5050_RS06430 WP_257937713.1 1238059..1238973(-) (waaF) [Campylobacter lari strain S3:81]
ATGAATATTTTTATCAACCTTCCTACTTGGCTTGGAGATGCAGTAATGGCTAGTGTGGCTATTTATGCTATAAAAGAAAA
ATACCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGCACAGAGCTTTTTAAACGCTTTGAAAATGCTCAAATTT
TAGTAGAAAATAAAAAGCAAAGATATAAGCAAATTTTACAAGCCAGAAAAAATCTTGGTAAATTTGATCTAGCTTTTTCG
TTTCGCTCGGCATTTTCAAGTAAGATTGTTTTAAATCTAATCAAAGCAAAGAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACATCAAGTTTTAAAATACTTAAATTTCATAGAAAAAGCTTTAAATTTTAAAGCAACTTCAAGTGCTTTAA
AACTCCCTATAAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAATGCAGGTGCGCATTTTGGAAGTGCGAAAAGATGG
GAAGCAATCTATTTTGCAAGGGTAGCAAAAGAATTTAGCTCCACGCATCAAATTTTAATCTTTGGAGTAGAAAGTGAGAG
AGAAATTTGTGATGAAATTGAGCGTTTTCTTTTAAAAGAAGGCATAAGGGCAAAAAATCTTTGTGGTAAAACCAGCATTT
ATACTTTATGTAAAAATATTTCTATGCTTGATTTACTCATCACAAATGATAGTGGTCCTATGCATATAGGTGCAGCTTAT
GGGGTAAAAACGGTGGCTGTTTTTGGCTCGACCAAATTCAGCCAAACATCACCTTGGCAAGAAAATGCTAAAATAGCTCA
TCTTGATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACACCACAAATGCATGAAAGACTTAAAGCCTG
ATGTGGTAATAAATTTAGCAAAAACATTTTTTTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(109-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.694

100

0.658

Multiple sequence alignment