Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ACKZH3_RS06645 Genome accession   NZ_CP176572
Coordinates   1415846..1418062 (+) Length   738 a.a.
NCBI ID   WP_409498456.1    Uniprot ID   -
Organism   Pseudomonas fragi strain LKYC.Zb1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1410846..1423062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKZH3_RS06625 (ACKZH3_06625) - 1412682..1413308 (+) 627 WP_086796061.1 glutathione S-transferase -
  ACKZH3_RS06630 (ACKZH3_06630) - 1413442..1414374 (+) 933 WP_095005482.1 ABC transporter ATP-binding protein -
  ACKZH3_RS06635 (ACKZH3_06635) - 1414371..1415150 (+) 780 WP_016779932.1 ABC transporter permease -
  ACKZH3_RS06640 (ACKZH3_06640) - 1415196..1415711 (-) 516 WP_016779933.1 DUF2062 domain-containing protein -
  ACKZH3_RS06645 (ACKZH3_06645) comA 1415846..1418062 (+) 2217 WP_409498456.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACKZH3_RS06650 (ACKZH3_06650) exbB 1418111..1418746 (+) 636 WP_029611293.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACKZH3_RS06655 (ACKZH3_06655) - 1418743..1419171 (+) 429 WP_088379256.1 ExbD/TolR family protein -
  ACKZH3_RS06660 (ACKZH3_06660) lpxK 1419171..1420181 (+) 1011 WP_120266602.1 tetraacyldisaccharide 4'-kinase -
  ACKZH3_RS06665 (ACKZH3_06665) - 1420203..1420388 (+) 186 WP_086796064.1 Trm112 family protein -
  ACKZH3_RS06670 (ACKZH3_06670) kdsB 1420385..1421149 (+) 765 WP_016779940.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACKZH3_RS06675 (ACKZH3_06675) murB 1421146..1422165 (+) 1020 WP_088379258.1 UDP-N-acetylmuramate dehydrogenase -
  ACKZH3_RS06680 (ACKZH3_06680) - 1422181..1422792 (+) 612 WP_409498457.1 hypothetical protein -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79715.74 Da        Isoelectric Point: 10.2739

>NTDB_id=1081026 ACKZH3_RS06645 WP_409498456.1 1415846..1418062(+) (comA) [Pseudomonas fragi strain LKYC.Zb1]
MYTGMLALAAGLMTLRFLPVLPSVGWLLLMLVAGLLLLACRAWPLGLFVLGLTWACVQGQRALDDRLADSFDGRTLWVEG
RVVGLPQQSGKSVRFELQGAKSRHGALPATIRLSWYGGPSVNSGERWRLAVKLKKPKGLLNPQGFDFEAWLLAQRIGATG
TVKQGQLQQAASHAWRDGLRQRLSGVDAQGRGAWLAALVLGDGSGLSRDDWALLQATGTVHLLVISGQHIGLFAGLIYGL
VALLARYGLWPGFLPWLPWACALAFIGATGYGLLAGFEVPVQRACAMLGLVLAWRLWFRQLGLWLPFLLALNAVLIAEPL
ASLRAGFWLSFSAVAVLLYTFGGRLGAWGWRAMWLRPQGLIALGLFPVLWILDLPISLTGPLANLLAVPWISLAVLPTAL
LGALLLPVPWLGENLLWLSGGLIDVLVQGLSLLADVFKPWLPASVPVYLWLLSVGGVLILLLPAGLVLRPLGWPLVLLAL
FAPREPIPHGQVEVLQLDVGQGLAIALRTRNHTLLYDAGPKFGDLDQGERVVVPVLRALGVGGLDLMLLSHADADHAGGA
LAVQRAINVARVVSGDVPGLAPQLRAQPCVSGHSWEWDGVRFALWQWAGASDSNQKSCVLQVQAGDERLLLTGDIDARAE
RELLKSPLGVPTRWLQAPHHGSKTSSSMVFLKALAPEIVLISRGHGNSFGHPHPQVMARYQALGVQVLDSAEQGAVKFRL
GVSGKAQSMRDQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=1081026 ACKZH3_RS06645 WP_409498456.1 1415846..1418062(+) (comA) [Pseudomonas fragi strain LKYC.Zb1]
ATGTACACAGGGATGTTGGCGCTGGCAGCGGGCCTGATGACGCTGCGCTTTTTACCGGTTTTACCGTCTGTCGGGTGGTT
GCTGCTGATGTTGGTGGCGGGGCTGTTGCTGTTGGCCTGCAGGGCCTGGCCGCTGGGGCTTTTTGTGCTGGGGCTGACCT
GGGCCTGCGTTCAGGGGCAAAGGGCGCTTGATGACCGTCTGGCGGATTCATTCGACGGGCGCACGCTTTGGGTTGAGGGG
CGTGTGGTCGGGTTGCCGCAGCAGTCCGGCAAGTCCGTTCGTTTTGAGTTGCAAGGGGCGAAGTCGCGGCATGGCGCGCT
GCCCGCGACCATCAGGCTGAGCTGGTATGGCGGGCCCTCCGTGAACAGCGGCGAGCGCTGGCGGCTGGCGGTCAAGCTCA
AGAAGCCCAAGGGCTTGCTCAACCCCCAGGGGTTTGATTTTGAAGCCTGGTTACTGGCGCAGCGCATCGGTGCCACCGGC
ACGGTCAAGCAGGGGCAACTGCAGCAAGCCGCCAGCCACGCCTGGCGTGACGGCTTGCGCCAACGCCTGTCAGGGGTTGA
TGCCCAAGGCCGGGGCGCCTGGCTGGCAGCGCTGGTCCTGGGTGACGGGTCGGGCCTGAGCCGGGATGACTGGGCGCTGC
TGCAAGCCACCGGCACGGTGCATTTGCTGGTGATCTCGGGGCAGCATATCGGCCTGTTTGCCGGCTTGATCTACGGGTTG
GTCGCCCTGCTGGCGCGTTATGGGCTGTGGCCAGGCTTTTTGCCGTGGCTGCCCTGGGCGTGTGCCCTGGCGTTTATCGG
CGCCACAGGCTATGGCCTGCTGGCTGGTTTTGAAGTGCCAGTGCAGCGGGCGTGCGCGATGCTCGGTCTGGTGCTGGCAT
GGCGTTTGTGGTTTCGCCAGTTGGGGCTGTGGCTGCCTTTTTTGCTGGCGCTCAATGCGGTGCTGATTGCCGAGCCGCTG
GCGAGCCTGCGGGCGGGGTTCTGGTTGTCATTCAGCGCCGTGGCGGTGCTGCTTTATACCTTCGGCGGCCGTTTGGGGGC
GTGGGGGTGGCGGGCCATGTGGCTGCGGCCTCAGGGCCTGATAGCCCTGGGCTTGTTCCCGGTGCTGTGGATCCTTGATT
TGCCCATCAGCCTGACCGGGCCGCTGGCCAATCTGCTGGCGGTGCCCTGGATCAGCCTGGCGGTGCTGCCCACGGCACTG
CTGGGGGCCTTGCTGCTGCCCGTGCCCTGGCTGGGGGAAAACCTGCTGTGGTTATCGGGTGGCCTGATCGATGTGCTGGT
GCAGGGGTTGAGCTTGCTGGCCGATGTGTTCAAGCCCTGGTTGCCCGCATCGGTGCCGGTTTACCTTTGGTTGTTGAGTG
TTGGCGGAGTGCTGATCCTGTTGTTGCCAGCGGGGTTGGTGTTGCGGCCGTTGGGCTGGCCGCTGGTGCTGCTGGCGCTG
TTTGCGCCCCGGGAGCCGATCCCCCACGGTCAGGTCGAGGTGCTGCAGCTGGATGTCGGCCAGGGCCTGGCCATTGCGTT
GCGTACCCGCAATCACACGCTGTTGTATGACGCCGGCCCCAAGTTCGGCGATCTGGATCAGGGGGAGCGGGTGGTGGTGC
CGGTTTTGCGCGCTCTGGGCGTTGGCGGGCTGGATTTGATGCTGCTCAGCCATGCTGACGCCGATCATGCCGGTGGCGCG
CTGGCAGTGCAGCGCGCGATCAACGTGGCGCGGGTGGTCAGCGGTGATGTACCTGGGCTGGCGCCGCAGTTGCGGGCGCA
ACCCTGTGTCAGTGGCCACAGCTGGGAGTGGGACGGGGTGCGGTTTGCACTCTGGCAGTGGGCGGGGGCGAGCGACAGCA
ATCAAAAGTCCTGCGTGCTACAGGTGCAGGCCGGCGATGAACGGTTGCTGCTGACCGGGGATATCGATGCCAGGGCCGAG
CGTGAGTTGCTGAAAAGCCCGCTGGGCGTGCCCACCCGTTGGTTGCAGGCCCCGCACCACGGCAGCAAGACTTCGTCGTC
GATGGTGTTTCTCAAGGCGCTGGCGCCTGAAATCGTGCTGATATCCCGGGGGCATGGTAATAGCTTCGGTCATCCCCATC
CGCAGGTAATGGCCCGGTATCAGGCGCTGGGCGTGCAGGTACTGGACAGCGCCGAGCAGGGTGCGGTGAAATTTCGTCTC
GGGGTGTCGGGCAAGGCTCAAAGCATGCGTGACCAACGCCGCTTCTGGCGCGATTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)

Domain of unknown function (DUF4131) (DUF4131)

(20-166)

Competence protein (Competence)

(198-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.832

97.425

0.573

Multiple sequence alignment