Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   ACK2WG_RS19045 Genome accession   NZ_CP176536
Coordinates   3729738..3730883 (+) Length   381 a.a.
NCBI ID   WP_409509285.1    Uniprot ID   -
Organism   Bacillus spizizenii strain 29-4     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 3731537..3732687 3729738..3730883 flank 654


Gene organization within MGE regions


Location: 3729738..3732687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2WG_RS19045 (ACK2WG_19045) rapF 3729738..3730883 (+) 1146 WP_409509285.1 tetratricopeptide repeat protein Regulator
  ACK2WG_RS19050 (ACK2WG_19050) - 3731153..3731478 (+) 326 Protein_3704 YbaK/EbsC family protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45496.00 Da        Isoelectric Point: 5.0391

>NTDB_id=1080815 ACK2WG_RS19045 WP_409509285.1 3729738..3730883(+) (rapF) [Bacillus spizizenii strain 29-4]
MTGVISSSSVGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLIEIDKKQARLTGVLDYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSEVYYYMKQTYVS
MDYARQAYEIYTAQTAYDIRLTQCHSLFGANFLDLKQYDQAISHFQKAFSMADAEQQPQLMGRTLYNVALCHNNQKDFQN
AIDHLVRAITVFENAEIINSLPQPYFLITQIYFNLGNLIKAEEYYNKGLAHSLKAEDNVYLRKFEFLKSLHLSGPDEEQI
NKCFLFLESKLMYADMEDLALDAAKYYYKLEDFKKASAYFLKVEDIRQHIQGGVNLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=1080815 ACK2WG_RS19045 WP_409509285.1 3729738..3730883(+) (rapF) [Bacillus spizizenii strain 29-4]
GTGACAGGTGTCATATCTTCTTCTTCCGTCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAGTATTTGCGAAGAGAAATCAAACAAGAGCTGGATCAAATGGAAGAAGATCAGGATCTTCATTTGTACTATT
CACTGATGGAATTCCGGCACAACCTGATGCTTGAGTACCTTGAACCACTAGAGAAAATGCGGATCGAGGAACAGCCGAGA
TTGTCAGATTTGCTGATTGAGATTGATAAAAAACAGGCTCGTTTAACTGGAGTCCTTGATTATTACTTTAATTTCTTCAG
GGGCATGTATGAGCTAGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTTAAAAAGGCCGAAAGCAAGTTGATATTTG
TTAAGGATCGGATAGAGAAGGCTGAGTTTTTCTTTAAGATGTCTGAGGTTTACTATTATATGAAACAAACCTATGTATCA
ATGGATTATGCCAGACAAGCGTATGAAATTTATACAGCACAGACTGCATATGATATAAGGCTTACTCAGTGCCACTCCTT
GTTTGGGGCAAATTTCTTGGATCTAAAACAATATGATCAAGCGATATCTCATTTTCAAAAAGCTTTTTCGATGGCTGATG
CGGAACAGCAGCCTCAATTAATGGGAAGAACTCTATATAATGTTGCGCTTTGTCACAATAACCAAAAAGACTTTCAAAAT
GCTATAGATCACTTGGTAAGAGCTATCACTGTATTTGAGAATGCAGAAATCATAAATTCCCTTCCTCAGCCATACTTCTT
GATTACACAAATATATTTTAATTTAGGTAATCTGATAAAAGCAGAAGAATATTATAATAAGGGATTAGCCCATTCTCTAA
AAGCTGAGGATAATGTTTATCTCCGCAAGTTTGAATTTTTAAAATCTTTACACTTATCTGGTCCTGATGAAGAACAAATT
AATAAATGTTTTCTTTTCCTTGAAAGTAAATTGATGTACGCTGATATGGAGGATTTAGCCCTTGATGCAGCCAAATACTA
CTATAAGTTAGAGGATTTTAAGAAAGCCTCCGCTTATTTTTTGAAGGTTGAAGATATCAGACAGCACATTCAAGGAGGAG
TGAATTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(265-289)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

79.528

100

0.795
  rapC Bacillus subtilis subsp. subtilis str. 168

56.316

99.738

0.562

Multiple sequence alignment