Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ACK2WG_RS13980 Genome accession   NZ_CP176536
Coordinates   2717414..2718160 (-) Length   248 a.a.
NCBI ID   WP_409509061.1    Uniprot ID   -
Organism   Bacillus spizizenii strain 29-4     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2712414..2723160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2WG_RS13955 (ACK2WG_13955) mreC 2712821..2713693 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  ACK2WG_RS13960 (ACK2WG_13960) mreB 2713724..2714737 (-) 1014 WP_014114656.1 cell shape-determining protein MreB -
  ACK2WG_RS13965 (ACK2WG_13965) radC 2714829..2715524 (-) 696 WP_041521028.1 RadC family protein -
  ACK2WG_RS13970 (ACK2WG_13970) - 2715561..2716130 (-) 570 WP_014114658.1 Maf family nucleotide pyrophosphatase -
  ACK2WG_RS13975 (ACK2WG_13975) spoIIB 2716282..2717280 (-) 999 WP_072566630.1 stage II sporulation protein SpoIIB -
  ACK2WG_RS13980 (ACK2WG_13980) comC 2717414..2718160 (-) 747 WP_409509061.1 prepilin peptidase Machinery gene
  ACK2WG_RS13985 (ACK2WG_13985) - 2718297..2719589 (-) 1293 WP_409509062.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  ACK2WG_RS13990 (ACK2WG_13990) valS 2719649..2722291 (-) 2643 WP_409509795.1 valine--tRNA ligase -
  ACK2WG_RS13995 (ACK2WG_13995) - 2722739..2722930 (+) 192 WP_014114664.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26434.13 Da        Isoelectric Point: 9.9495

>NTDB_id=1080798 ACK2WG_RS13980 WP_409509061.1 2717414..2718160(-) (comC) [Bacillus spizizenii strain 29-4]
MLPILFLLGLILGSFYYTAGCRIPLHISIIAPRSACSFCRRTLTAAELIPILSFLFQKGKCKSCGRRISIMYPAAELVTA
CLFAAAGIRFGSSPELLPAVVFISLLIIVVVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYASLLGAAAGFLFLSLI
AAITHGGIGGGDIKLFAVIGFMLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGESIIS
FYMKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=1080798 ACK2WG_RS13980 WP_409509061.1 2717414..2718160(-) (comC) [Bacillus spizizenii strain 29-4]
ATGCTTCCCATTCTTTTTCTCCTCGGGCTGATCCTTGGTTCATTTTACTATACGGCCGGGTGCCGTATCCCCTTGCATAT
ATCCATTATCGCGCCCCGTTCGGCATGCTCGTTTTGCCGGCGGACATTAACCGCGGCAGAATTAATTCCCATCCTGTCAT
TCCTTTTCCAAAAGGGCAAATGTAAAAGCTGCGGACGTAGAATTTCAATTATGTATCCCGCGGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCTCATCTCCGGAACTATTGCCTGCTGTTGTATTTATCTCTCTTCTCAT
CATTGTTGTAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCAG
CAAGATTGATTTCTCCGCTTGATTCCTGGTATGCCAGCCTGTTAGGTGCGGCCGCCGGATTTCTTTTCCTGTCCTTAATT
GCCGCAATCACCCATGGAGGAATAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTATGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTGTATGGAGCGGCAGCTGTCCTGACTGGAAGACTCGCCA
AAAGGCAACCGCTTCCCTTTGCCCCCGCAATTGCGGCAGGGAGCATTTTAGCCTATTTATACGGTGAGTCTATTATTTCT
TTTTATATGAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

91.935

100

0.919

Multiple sequence alignment