Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACK2WG_RS08645 Genome accession   NZ_CP176536
Coordinates   1670513..1671406 (+) Length   297 a.a.
NCBI ID   WP_409509691.1    Uniprot ID   -
Organism   Bacillus spizizenii strain 29-4     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1665513..1676406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2WG_RS08625 (ACK2WG_08625) - 1666185..1667912 (+) 1728 WP_409509690.1 hypothetical protein -
  ACK2WG_RS08630 (ACK2WG_08630) - 1667909..1668190 (+) 282 WP_014113777.1 FlhB-like flagellar biosynthesis protein -
  ACK2WG_RS08635 (ACK2WG_08635) sucC 1668364..1669521 (+) 1158 WP_019714397.1 ADP-forming succinate--CoA ligase subunit beta -
  ACK2WG_RS08640 (ACK2WG_08640) sucD 1669550..1670452 (+) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  ACK2WG_RS08645 (ACK2WG_08645) dprA 1670513..1671406 (+) 894 WP_409509691.1 DNA-processing protein DprA Machinery gene
  ACK2WG_RS08650 (ACK2WG_08650) topA 1671593..1673668 (+) 2076 WP_014113782.1 type I DNA topoisomerase -
  ACK2WG_RS08655 (ACK2WG_08655) trmFO 1673744..1675051 (+) 1308 WP_061187458.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACK2WG_RS08660 (ACK2WG_08660) xerC 1675119..1676033 (+) 915 WP_061187459.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32968.35 Da        Isoelectric Point: 9.6987

>NTDB_id=1080774 ACK2WG_RS08645 WP_409509691.1 1670513..1671406(+) (dprA) [Bacillus spizizenii strain 29-4]
MDQAAACLMICRINQLLSPSLLLKWWKADPSMSLTSPVLETVTRGKIKAAALKNKIEEQYPKLQRVLAAYHEQGINPIPI
SSKQYPFWLKTIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGIQIVNHLTEELCRKNWVIVSGLASGIDGMSHAAS
IKVKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=1080774 ACK2WG_RS08645 WP_409509691.1 1670513..1671406(+) (dprA) [Bacillus spizizenii strain 29-4]
TTGGATCAGGCCGCTGCCTGTTTAATGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCTGATCCGTCTATGTCGCTGACGTCACCCGTGTTAGAAACTGTTACTCGAGGTAAAATAAAGGCAGCTGCATTAAAAA
ATAAAATAGAAGAACAATATCCAAAGCTTCAGCGTGTACTTGCTGCTTACCATGAGCAAGGAATTAACCCCATCCCGATT
TCTTCAAAGCAATATCCTTTCTGGCTGAAAACCATTTATGATCCCCCCGCTGTCCTGTTTGCAAAGGGTGATATGACCCT
TCTTTCTAAAGGGAGGAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGATACAAATTGTCAATCATCTTA
CAGAAGAGCTCTGCCGTAAAAATTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGTGAAGGGGCGGACAATCGGCGTCATTGCAGGCGGATTTCAACACATATATCCCCGGGAAAACCTTCAGTTAGC
AGATCATATGGCTAAACACCATATCCTTCTGTCAGAGCACCCACCTGAAACCAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGATTAAGTGAAGGCGTTATTGTCGTGCAGGGCAAAGAAAAAAGTGGTTCGCTGATTACTGCA
TATCAAGCACTGGAACAAGGAAGAGAAGTATTTGCCGTACCCGGCTCATTATTTGATCCTTACGCCGGAGGTCCTATAAA
ATTGATCCAGCAGGGGGCTAAAGCTATATGGTCAGCAGAGGATATTTTCGAGGAGCTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

93.939

100

0.939

Multiple sequence alignment