Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ACK2WG_RS05680 Genome accession   NZ_CP176536
Coordinates   1110218..1110796 (+) Length   192 a.a.
NCBI ID   WP_024712928.1    Uniprot ID   A0A9Q4E5F7
Organism   Bacillus spizizenii strain 29-4     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1105218..1115796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2WG_RS05655 (ACK2WG_05655) - 1105730..1106245 (-) 516 WP_371864110.1 methyl-accepting chemotaxis protein -
  ACK2WG_RS05660 (ACK2WG_05660) - 1106486..1107112 (-) 627 Protein_1060 protoglobin domain-containing protein -
  ACK2WG_RS05665 (ACK2WG_05665) - 1107167..1108696 (-) 1530 WP_409509589.1 FAD-dependent oxidoreductase -
  ACK2WG_RS05670 (ACK2WG_05670) - 1108808..1109665 (+) 858 WP_409509590.1 SDR family oxidoreductase -
  ACK2WG_RS05675 (ACK2WG_05675) - 1109692..1109925 (-) 234 WP_409509591.1 IDEAL domain-containing protein -
  ACK2WG_RS05680 (ACK2WG_05680) comK 1110218..1110796 (+) 579 WP_024712928.1 competence transcription factor ComK Regulator
  ACK2WG_RS05685 (ACK2WG_05685) - 1110843..1111742 (-) 900 WP_409509592.1 SDR family oxidoreductase -
  ACK2WG_RS05690 (ACK2WG_05690) - 1111960..1112229 (+) 270 WP_014113282.1 excalibur calcium-binding domain-containing protein -
  ACK2WG_RS05700 (ACK2WG_05700) - 1113562..1115031 (-) 1470 WP_114150736.1 sodium:solute symporter -
  ACK2WG_RS05705 (ACK2WG_05705) - 1115028..1115228 (-) 201 WP_014113284.1 DUF3311 domain-containing protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22382.68 Da        Isoelectric Point: 7.6610

>NTDB_id=1080759 ACK2WG_RS05680 WP_024712928.1 1110218..1110796(+) (comK) [Bacillus spizizenii strain 29-4]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVSMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKPTEFDDTEVTFSNGKTMELPISCNSFENQVYRTAWLRTKFQDRIEH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1080759 ACK2WG_RS05680 WP_024712928.1 1110218..1110796(+) (comK) [Bacillus spizizenii strain 29-4]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATCGA
CGGCAAAATTTGTTCCAAAATTATTGAAAAAGACTGCGTGTTTTACGTCAGCATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGGTTTTTCGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAACCGCCG
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTGAAAGAATTCAAACCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCCTGCAATTCGTTCGAGAACCAGGTATACCGGACAGCATGGCTAAGAACCAAATTCCAAGACAGAATCGAACAC
CGTGTGCCAAAACGGCAGGAATTTATGCTGTATCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment