Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ACFGDV_RS24175 Genome accession   NZ_CP176528
Coordinates   5195557..5197044 (+) Length   495 a.a.
NCBI ID   WP_136417831.1    Uniprot ID   -
Organism   Noviherbaspirillum sp. ST 5-3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5190557..5202044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFGDV_RS24150 - 5192059..5193087 (+) 1029 WP_136417826.1 SIS domain-containing protein -
  ACFGDV_RS24155 - 5193087..5193614 (+) 528 WP_136417827.1 KdsC family phosphatase -
  ACFGDV_RS24160 lptC 5193659..5194204 (+) 546 WP_247869638.1 LPS export ABC transporter periplasmic protein LptC -
  ACFGDV_RS24165 lptA 5194244..5194795 (+) 552 WP_136417829.1 lipopolysaccharide transport periplasmic protein LptA -
  ACFGDV_RS24170 lptB 5194798..5195538 (+) 741 WP_136417830.1 LPS export ABC transporter ATP-binding protein -
  ACFGDV_RS24175 rpoN/rpoN1 5195557..5197044 (+) 1488 WP_136417831.1 RNA polymerase factor sigma-54 Machinery gene
  ACFGDV_RS24180 hpf 5197150..5197497 (+) 348 WP_136417832.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACFGDV_RS24185 - 5197658..5198749 (+) 1092 WP_136417833.1 enoyl-CoA hydratase/isomerase family protein -
  ACFGDV_RS24190 - 5198746..5199897 (-) 1152 WP_136417834.1 deoxyguanosinetriphosphate triphosphohydrolase -
  ACFGDV_RS24195 aroKB 5199898..5201528 (-) 1631 Protein_4784 bifunctional shikimate kinase/3-dehydroquinate synthase AroKB -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 55236.78 Da        Isoelectric Point: 5.2873

>NTDB_id=1080732 ACFGDV_RS24175 WP_136417831.1 5195557..5197044(+) (rpoN/rpoN1) [Noviherbaspirillum sp. ST 5-3]
MKQTLQLRISQHLALTPQLQQSIRLLQLSTLELHQELEQILSDNPLLERIDDPLDNSVRLLADGAISATPSLNGSTSEAP
ASDSSPSAPEESEGGFEGGDAGDAPASGEGEWSFDDVARTSKAPEDDDSRPQLEAHETTLREHLLEQMRVTVHELRDRAL
VELIIDALNDNGYLEEPIEEIHARLPEELGVDIEELQVALRLLQSFDPAGVGARNASECLSIQIRRFPKVPMVTRRRALQ
IVENHLALFAQRDFNKLKKILDCDDEDLREAQYVIKQCNPHPGALFASDTSDFVVPDVIVKKTKNGWQVMLNHDVMPRLR
VNAMYANILKQSKGEGSLTSQLQEAKWLIKNMRQRFDTILRVAQAIVDRQRNFFSHGAVAMRPLVLREIADTLGLHESTI
SRVTTQKYMLTPHGMFELKYFFGSHVATEAGGEASSTAIRALIKQLIGAEDPKNPFSDSKIADMLGEQGMVVARRTVAKY
REALKIPPVNLRKSL

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=1080732 ACFGDV_RS24175 WP_136417831.1 5195557..5197044(+) (rpoN/rpoN1) [Noviherbaspirillum sp. ST 5-3]
ATGAAACAAACTCTCCAACTTCGAATCTCGCAACATCTTGCGCTGACGCCTCAGCTGCAGCAATCGATCCGCTTGCTGCA
GTTGTCGACGCTTGAACTGCATCAGGAGCTGGAACAAATCCTTTCCGACAACCCGCTTCTGGAGCGCATCGACGACCCGC
TCGACAATTCCGTCCGCCTGCTGGCGGATGGCGCAATCAGCGCGACCCCGAGTCTCAACGGGAGCACGTCAGAAGCACCG
GCGTCCGATAGCAGCCCTTCTGCTCCGGAAGAATCGGAAGGCGGCTTTGAAGGTGGCGATGCCGGCGATGCACCTGCATC
CGGCGAAGGCGAATGGAGTTTCGACGATGTCGCGCGCACATCCAAGGCACCGGAAGACGACGATTCGCGCCCGCAACTTG
AGGCGCATGAGACAACCTTGCGCGAACACCTGCTGGAACAAATGCGCGTCACGGTGCACGAATTGCGCGACCGCGCCTTG
GTCGAATTGATCATCGATGCCTTGAACGACAACGGCTATCTGGAAGAACCGATCGAGGAAATCCATGCACGCTTGCCGGA
GGAGCTCGGGGTCGACATCGAGGAATTGCAGGTCGCGTTGAGATTGCTGCAGAGTTTCGATCCGGCGGGTGTCGGCGCGC
GCAATGCCTCGGAATGCCTGTCGATTCAAATCCGGCGCTTCCCGAAAGTACCGATGGTGACGCGTCGCCGGGCATTGCAG
ATCGTCGAGAATCATCTCGCCCTGTTCGCGCAGCGCGATTTCAACAAGCTGAAGAAAATCCTCGATTGCGACGATGAAGA
CCTGCGTGAAGCGCAGTACGTGATCAAGCAGTGCAATCCGCATCCCGGCGCCCTGTTCGCGTCCGACACATCGGATTTCG
TTGTGCCGGATGTCATTGTCAAGAAGACAAAGAACGGCTGGCAGGTGATGCTGAACCACGACGTCATGCCGCGCCTGCGG
GTCAATGCGATGTACGCCAACATCCTCAAGCAAAGCAAGGGTGAGGGGTCACTCACTTCTCAGCTGCAGGAGGCCAAATG
GCTGATCAAGAATATGCGGCAGCGCTTCGACACGATATTGCGCGTTGCACAAGCCATCGTCGACCGCCAGCGCAACTTTT
TCTCGCACGGCGCGGTCGCCATGCGCCCTCTTGTCTTGCGTGAAATTGCTGATACACTTGGTTTACACGAGAGCACTATT
TCTCGTGTAACAACTCAAAAATACATGCTGACTCCTCATGGCATGTTCGAGTTGAAGTACTTTTTCGGTAGCCACGTCGC
CACCGAAGCGGGAGGAGAAGCGTCTTCGACGGCGATACGTGCACTGATCAAACAATTGATAGGAGCAGAAGACCCCAAGA
ATCCATTCTCAGATAGCAAAATCGCGGATATGTTGGGGGAACAAGGCATGGTGGTCGCACGACGCACAGTCGCGAAATAC
CGCGAAGCCCTGAAAATCCCTCCAGTCAATCTGCGCAAATCCCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(133-325)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(338-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

59.921

100

0.61

Multiple sequence alignment