Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ACFGDV_RS04830 Genome accession   NZ_CP176528
Coordinates   998223..998624 (+) Length   133 a.a.
NCBI ID   WP_136413142.1    Uniprot ID   -
Organism   Noviherbaspirillum sp. ST 5-3     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 993223..1003624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFGDV_RS04810 - 994226..995503 (-) 1278 WP_136413145.1 NRAMP family divalent metal transporter -
  ACFGDV_RS04815 hemL 995674..996957 (-) 1284 WP_136413144.1 glutamate-1-semialdehyde 2,1-aminomutase -
  ACFGDV_RS04820 - 996976..997806 (-) 831 WP_136413143.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase -
  ACFGDV_RS04825 - 997906..998058 (+) 153 WP_135082287.1 rubredoxin -
  ACFGDV_RS04830 pilG 998223..998624 (+) 402 WP_136413142.1 PleD family two-component system response regulator Regulator
  ACFGDV_RS04835 - 998648..999013 (+) 366 WP_136413141.1 response regulator transcription factor -
  ACFGDV_RS04840 - 999023..999598 (+) 576 WP_136413140.1 chemotaxis protein CheW -
  ACFGDV_RS04845 - 999653..1001980 (+) 2328 WP_136413139.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14642.98 Da        Isoelectric Point: 8.4755

>NTDB_id=1080715 ACFGDV_RS04830 WP_136413142.1 998223..998624(+) (pilG) [Noviherbaspirillum sp. ST 5-3]
MTTSLDNSSLKIMVIDDSSTIRRSAEIFLGQAGYQVVLADDGFDALAKMNDHKPALIFCDILMPRLDGYQTCALIKKSAK
FHSTPVIMLSSKDGLFDRARGAMVGSDAYLTKPFTKDSLLKTVREYTAQVLSK

Nucleotide


Download         Length: 402 bp        

>NTDB_id=1080715 ACFGDV_RS04830 WP_136413142.1 998223..998624(+) (pilG) [Noviherbaspirillum sp. ST 5-3]
ATGACAACATCACTGGATAACAGCAGCCTCAAGATCATGGTCATCGACGACAGCAGCACGATACGTCGTTCGGCAGAGAT
CTTTCTGGGGCAGGCTGGATATCAGGTCGTTCTTGCCGATGATGGCTTTGATGCGCTTGCCAAGATGAATGATCACAAGC
CGGCCTTGATTTTTTGCGACATCCTGATGCCGAGGCTCGATGGCTATCAGACTTGCGCACTGATCAAGAAAAGCGCGAAG
TTTCATTCAACGCCGGTAATCATGTTGTCCTCGAAGGATGGCCTGTTTGATCGGGCGCGCGGCGCGATGGTTGGATCAGA
TGCCTATCTCACTAAACCGTTTACCAAGGACAGTCTGCTCAAGACCGTGCGCGAATACACCGCTCAGGTACTTTCCAAGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(12-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

60.833

90.226

0.549

Multiple sequence alignment