Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   ACKW6F_RS06860 Genome accession   NZ_CP176527
Coordinates   1380687..1381148 (-) Length   153 a.a.
NCBI ID   WP_008356877.1    Uniprot ID   -
Organism   Bacillus safensis strain D-62     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1375687..1386148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKW6F_RS06835 (ACKW6F_06835) - 1376289..1377173 (+) 885 WP_133743879.1 cation diffusion facilitator family transporter -
  ACKW6F_RS06840 (ACKW6F_06840) - 1377238..1377390 (-) 153 WP_162842519.1 hypothetical protein -
  ACKW6F_RS06845 (ACKW6F_06845) - 1377692..1378231 (+) 540 WP_409482436.1 RDD family protein -
  ACKW6F_RS06850 (ACKW6F_06850) - 1378357..1379667 (+) 1311 WP_024424708.1 MFS transporter -
  ACKW6F_RS06855 (ACKW6F_06855) - 1379741..1380649 (+) 909 WP_024424709.1 chemotaxis protein -
  ACKW6F_RS06860 (ACKW6F_06860) kre 1380687..1381148 (-) 462 WP_008356877.1 YkyB family protein Regulator
  ACKW6F_RS06865 (ACKW6F_06865) - 1381814..1382689 (+) 876 WP_241743573.1 replicative DNA helicase -
  ACKW6F_RS06870 (ACKW6F_06870) - 1382935..1383093 (+) 159 WP_176544433.1 hypothetical protein -
  ACKW6F_RS06875 (ACKW6F_06875) - 1383269..1384093 (-) 825 WP_098676841.1 hypothetical protein -
  ACKW6F_RS06880 (ACKW6F_06880) - 1384335..1384523 (+) 189 WP_241743572.1 XtrA/YqaO family protein -
  ACKW6F_RS06885 (ACKW6F_06885) - 1384878..1385102 (+) 225 WP_326355678.1 ArpU family phage packaging/lysis transcriptional regulator -
  ACKW6F_RS06890 (ACKW6F_06890) - 1385316..1385963 (+) 648 WP_098676843.1 hypothetical protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17711.30 Da        Isoelectric Point: 10.2452

>NTDB_id=1080671 ACKW6F_RS06860 WP_008356877.1 1380687..1381148(-) (kre) [Bacillus safensis strain D-62]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=1080671 ACKW6F_RS06860 WP_008356877.1 1380687..1381148(-) (kre) [Bacillus safensis strain D-62]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAACCCCAAGTTTCTTTATCTTTTGAAAAAACGCGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAGTATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACGAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAACCGAGCAAAGCAAATACTTCAAACGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTACACAAAGCCCGTCTTCAAACGTCTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

75.974

100

0.765

Multiple sequence alignment