Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   ACKW6F_RS05255 Genome accession   NZ_CP176527
Coordinates   1077255..1078205 (+) Length   316 a.a.
NCBI ID   WP_149125796.1    Uniprot ID   -
Organism   Bacillus safensis strain D-62     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1072255..1083205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKW6F_RS05230 (ACKW6F_05230) comK 1072603..1073181 (+) 579 WP_024425481.1 competence protein ComK Regulator
  ACKW6F_RS05235 (ACKW6F_05235) - 1073481..1073963 (+) 483 WP_024425482.1 hypothetical protein -
  ACKW6F_RS05240 (ACKW6F_05240) - 1073994..1075433 (-) 1440 WP_149125797.1 PLP-dependent aminotransferase family protein -
  ACKW6F_RS05245 (ACKW6F_05245) - 1075579..1076748 (+) 1170 WP_024425484.1 MFS transporter -
  ACKW6F_RS05250 (ACKW6F_05250) - 1076814..1077092 (+) 279 WP_024425485.1 barstar family protein -
  ACKW6F_RS05255 (ACKW6F_05255) ceuB 1077255..1078205 (+) 951 WP_149125796.1 ABC transporter permease Machinery gene
  ACKW6F_RS05260 (ACKW6F_05260) - 1078198..1079148 (+) 951 WP_024425487.1 iron chelate uptake ABC transporter family permease subunit -
  ACKW6F_RS05265 (ACKW6F_05265) - 1079139..1079897 (+) 759 WP_024425488.1 ABC transporter ATP-binding protein -
  ACKW6F_RS05270 (ACKW6F_05270) - 1079919..1080863 (+) 945 WP_149125795.1 siderophore ABC transporter substrate-binding protein -
  ACKW6F_RS05275 (ACKW6F_05275) - 1081002..1081955 (+) 954 WP_149125794.1 LCP family protein -
  ACKW6F_RS05280 (ACKW6F_05280) - 1082027..1082389 (-) 363 WP_034282166.1 hypothetical protein -
  ACKW6F_RS05285 (ACKW6F_05285) - 1082546..1083163 (+) 618 WP_024425492.1 TVP38/TMEM64 family protein -

Sequence


Protein


Download         Length: 316 a.a.        Molecular weight: 34957.31 Da        Isoelectric Point: 9.7475

>NTDB_id=1080660 ACKW6F_RS05255 WP_149125796.1 1077255..1078205(+) (ceuB) [Bacillus safensis strain D-62]
MKLYQLSLFFVCLACISLFVGVQDLSILQLFHLTDEQVHTLVSSRLPRLVSIVLAGMSLSLCGFIMQSMTRNKFVSPTTA
GTMDWAKLGILVAMLVFTQANPLMKMGIAFLFTLAGNLLFLKILRHIKVNDTIYVPLVGLMFGGIVSSISTFIAYKYDLI
QNVSAWLQGDFSLIVQGRYELLYVSVPLLIIAYLYADRFTVAGMGESFAVNLGLTYKRVMAVGLVIVSMITSVTILTVGM
LPFLGLIIPNIVSIYRGDHLKKSLPHTALLGAIFVLICDVLGRVIIYPYEISVGLMVGIIGSAIFLYMLLRRKRYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=1080660 ACKW6F_RS05255 WP_149125796.1 1077255..1078205(+) (ceuB) [Bacillus safensis strain D-62]
ATGAAATTGTATCAATTAAGTTTGTTTTTTGTATGTTTGGCATGTATATCTCTGTTTGTCGGTGTACAGGATCTGTCCAT
TTTACAGCTGTTTCATTTAACAGATGAACAAGTGCACACGTTAGTTTCAAGCCGTCTCCCGCGTCTCGTGAGTATTGTGC
TTGCTGGTATGAGCCTTAGTTTATGCGGCTTTATTATGCAAAGCATGACGAGGAATAAATTTGTTTCACCAACCACTGCA
GGAACGATGGATTGGGCGAAGCTTGGTATTTTAGTAGCAATGCTTGTTTTTACACAAGCGAATCCGCTTATGAAAATGGG
GATTGCGTTTCTATTTACTTTAGCTGGGAATCTTCTTTTCTTAAAAATCCTGCGGCATATTAAGGTGAACGATACGATTT
ATGTACCATTAGTCGGCTTAATGTTTGGGGGGATTGTCAGTTCAATATCTACGTTTATAGCCTATAAATATGATTTGATC
CAAAACGTATCCGCATGGCTTCAAGGAGATTTTTCTCTTATTGTCCAAGGGCGTTATGAACTGCTCTATGTGAGCGTTCC
ACTATTGATCATTGCGTATTTATATGCTGACCGCTTTACAGTGGCAGGCATGGGCGAGAGCTTTGCCGTTAACTTAGGTT
TAACGTATAAACGTGTGATGGCGGTTGGGTTGGTGATCGTTTCAATGATTACGTCTGTCACCATTTTAACTGTCGGAATG
CTGCCATTCCTTGGATTAATCATTCCGAATATTGTATCGATCTACCGCGGCGATCACTTGAAAAAAAGCCTCCCGCATAC
AGCTTTACTAGGAGCTATTTTTGTTCTGATTTGTGATGTGCTCGGAAGGGTGATCATTTATCCATATGAAATATCAGTTG
GACTCATGGTAGGCATCATCGGAAGTGCGATCTTCCTGTACATGTTATTAAGGAGGAAACGCTATGCATAA

Domains


Predicted by InterproScan.

(11-311)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.955

99.367

0.506


Multiple sequence alignment