Detailed information NTG1080644

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: ACJX3V_RS17795
• Genome accession: NZ_CP176523
• Coordinates: 3589632..3590777 (+)
• Length: 381 a.a.
• NCBI ID: WP_088037228.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain MEPW12
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3584632..3595777

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJX3V_RS17775	-	3585106..3585822 (-)	717	WP_048367767.1	Crp/Fnr family transcriptional regulator	-
ACJX3V_RS17780	narK	3585920..3587110 (-)	1191	WP_044052814.1	nitrate transporter NarK	-
ACJX3V_RS17785	argS	3587245..3588915 (-)	1671	WP_207579576.1	arginine--tRNA ligase	-
ACJX3V_RS17790	-	3588912..3589340 (-)	429	WP_207579577.1	DUF1934 domain-containing protein	-
ACJX3V_RS17795	rapF	3589632..3590777 (+)	1146	WP_088037228.1	tetratricopeptide repeat protein	Regulator
ACJX3V_RS17800	-	3590761..3590880 (+)	120	WP_003151066.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
ACJX3V_RS17805	-	3591079..3591282 (+)	204	WP_003151064.1	helix-turn-helix transcriptional regulator	-
ACJX3V_RS17810	-	3591296..3591499 (+)	204	WP_003151062.1	hypothetical protein	-
ACJX3V_RS17815	-	3591907..3592188 (+)	282	WP_014306021.1	hypothetical protein	-
ACJX3V_RS17820	-	3592232..3592744 (+)	513	WP_032859656.1	stage II sporulation protein M	-
ACJX3V_RS17825	-	3593335..3593553 (-)	219	WP_003151056.1	helix-turn-helix transcriptional regulator	-
ACJX3V_RS17830	speB	3593723..3594595 (-)	873	WP_003151054.1	agmatinase	-
ACJX3V_RS17835	speE	3594655..3595485 (-)	831	WP_003151052.1	spermidine synthase	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45325.46 Da
• Isoelectric Point: 4.9264

>NTDB_id=1080644 ACJX3V_RS17795 WP_088037228.1 3589632..3590777(+) (rapF) [Bacillus amyloliquefaciens strain MEPW12]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELDQREYLSAIKFFKKAETKLSFIKDTIDKAEYFFKMSEVYYYLKQTYVS
TDYARQAYEIYKAQSSYDIRLIQCQSLFGANFLDLKLYDRAITHFQKAFSLAETEKQPQLMGRTLYNIALCKQSLNDYEA
AITYVEKAIDVFESAKMTPSLPQAYFLMTQIHYKLERYDKALEYHKKGVIYSEESADSVYLHEFEFLKSLYVNGPDEDAM
KRSFDFLESKMMYADIEDFALDAAKYYHKLEDYKKASTYFLKVEEARQHIQGGVTFYEAEV

Nucleotide

• Length: 1146 bp

>NTDB_id=1080644 ACJX3V_RS17795 WP_088037228.1 3589632..3590777(+) (rapF) [Bacillus amyloliquefaciens strain MEPW12]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGCCTGGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGATCAGCGGGAATATTTATCGGCTATAAAATTTTTTAAAAAGGCTGAGACGAAACTCTCATTTA
TTAAGGATACTATTGATAAAGCCGAGTACTTTTTCAAGATGTCTGAAGTCTACTACTATTTGAAACAAACGTATGTATCT
ACCGATTACGCAAGGCAGGCATATGAAATATATAAAGCTCAGTCGTCATACGATATCAGGCTCATACAATGCCAATCCTT
ATTCGGAGCAAATTTCCTGGATTTAAAACTATATGATCGGGCAATTACTCACTTTCAAAAGGCTTTTTCTTTGGCAGAAA
CAGAAAAACAGCCTCAATTAATGGGCAGGACGCTGTATAACATCGCACTTTGCAAACAAAGCCTGAACGACTATGAAGCA
GCTATAACTTATGTTGAAAAAGCCATTGATGTTTTTGAAAGTGCTAAAATGACCCCTTCTTTGCCCCAAGCATATTTTTT
AATGACACAGATTCATTATAAATTAGAAAGATACGACAAAGCGCTCGAGTATCATAAAAAAGGAGTTATCTATTCCGAAG
AGTCAGCAGATTCAGTTTATTTACATGAATTCGAATTTTTAAAATCTTTGTATGTGAACGGACCTGATGAGGATGCAATG
AAAAGGAGTTTTGACTTTTTGGAAAGTAAGATGATGTATGCAGATATAGAAGATTTTGCTCTTGATGCAGCTAAATATTA
TCACAAACTTGAAGATTATAAAAAAGCTTCAACATACTTTTTAAAAGTTGAAGAAGCAAGACAGCATATTCAAGGGGGGG
TAACTTTTTATGAAGCTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (223-287)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	74.541	100	0.745
rapC	Bacillus subtilis subsp. subtilis str. 168	53.158	99.738	0.53