Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ACJX3V_RS13065 Genome accession   NZ_CP176523
Coordinates   2670478..2671230 (-) Length   250 a.a.
NCBI ID   WP_044053500.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MEPW12     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2665478..2676230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJX3V_RS13040 mreC 2665914..2666777 (-) 864 WP_003152649.1 rod shape-determining protein MreC -
  ACJX3V_RS13045 mreB 2666808..2667821 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  ACJX3V_RS13050 radC 2667913..2668608 (-) 696 WP_003152646.1 RadC family protein -
  ACJX3V_RS13055 - 2668640..2669209 (-) 570 WP_003152645.1 Maf family protein -
  ACJX3V_RS13060 - 2669350..2670351 (-) 1002 WP_046559966.1 SPOR domain-containing protein -
  ACJX3V_RS13065 comC 2670478..2671230 (-) 753 WP_044053500.1 prepilin peptidase Machinery gene
  ACJX3V_RS13070 - 2671370..2672662 (-) 1293 WP_014305515.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  ACJX3V_RS13075 - 2672721..2675363 (-) 2643 WP_014305516.1 valine--tRNA ligase -
  ACJX3V_RS13080 - 2675816..2676007 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27182.83 Da        Isoelectric Point: 9.2521

>NTDB_id=1080627 ACJX3V_RS13065 WP_044053500.1 2670478..2671230(-) (comC) [Bacillus amyloliquefaciens strain MEPW12]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSSCSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGSLGKKQPFPFAPAISAGSALSYLYGDELFS
FYIKLTSGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=1080627 ACJX3V_RS13065 WP_044053500.1 2670478..2671230(-) (comC) [Bacillus amyloliquefaciens strain MEPW12]
GTGCTTTTAATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCATCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGTTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTCCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCGGTATACGGTATGTGCGCCGCAGCCCGGGGCAGTCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGATGAGCTGTTTTCG
TTTTACATCAAGCTCACTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584

Multiple sequence alignment