Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ACJX3V_RS12210 Genome accession   NZ_CP176523
Coordinates   2511649..2512416 (-) Length   255 a.a.
NCBI ID   WP_046559881.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MEPW12     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2506649..2517416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJX3V_RS12190 - 2506851..2507663 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  ACJX3V_RS12195 ccpN 2507689..2508327 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  ACJX3V_RS12200 glyS 2508428..2510467 (-) 2040 WP_014305438.1 glycine--tRNA ligase subunit beta -
  ACJX3V_RS12205 glyQ 2510460..2511347 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  ACJX3V_RS12210 recO 2511649..2512416 (-) 768 WP_046559881.1 DNA repair protein RecO Machinery gene
  ACJX3V_RS12215 - 2512453..2512596 (-) 144 WP_007408286.1 YqzL family protein -
  ACJX3V_RS12220 era 2512752..2513657 (-) 906 WP_003152978.1 GTPase Era -
  ACJX3V_RS12225 - 2513638..2514048 (-) 411 WP_003152976.1 cytidine deaminase -
  ACJX3V_RS12230 - 2514172..2514546 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  ACJX3V_RS12235 ybeY 2514527..2515000 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  ACJX3V_RS12240 - 2515001..2517133 (-) 2133 WP_046559882.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29263.92 Da        Isoelectric Point: 8.7950

>NTDB_id=1080620 ACJX3V_RS12210 WP_046559881.1 2511649..2512416(-) (recO) [Bacillus amyloliquefaciens strain MEPW12]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQKTKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1080620 ACJX3V_RS12210 WP_046559881.1 2511649..2512416(-) (recO) [Bacillus amyloliquefaciens strain MEPW12]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACATTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGTAGCGTCTCGTTAAAACAGAAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89

Multiple sequence alignment