Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ACJX3V_RS11705 Genome accession   NZ_CP176523
Coordinates   2426381..2427181 (-) Length   266 a.a.
NCBI ID   WP_003153177.1    Uniprot ID   I2C7K5
Organism   Bacillus amyloliquefaciens strain MEPW12     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2421381..2432181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJX3V_RS11675 - 2421930..2422562 (+) 633 WP_014418348.1 helix-turn-helix domain-containing protein -
  ACJX3V_RS11680 - 2422853..2422990 (+) 138 WP_224979422.1 hypothetical protein -
  ACJX3V_RS11685 - 2423084..2424202 (+) 1119 WP_058906708.1 NADH-dependent flavin oxidoreductase -
  ACJX3V_RS11690 - 2424328..2424540 (+) 213 WP_003153183.1 spore germination protein -
  ACJX3V_RS11695 - 2424666..2424878 (+) 213 WP_014305392.1 spore germination protein -
  ACJX3V_RS11700 alr 2425054..2426235 (+) 1182 WP_015388018.1 alanine racemase -
  ACJX3V_RS11705 spo0A 2426381..2427181 (-) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  ACJX3V_RS11710 spoIVB 2427462..2428742 (-) 1281 WP_007408360.1 SpoIVB peptidase -
  ACJX3V_RS11715 recN 2428906..2430636 (-) 1731 WP_207579556.1 DNA repair protein RecN Machinery gene
  ACJX3V_RS11720 ahrC 2430668..2431117 (-) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  ACJX3V_RS11725 - 2431214..2432059 (-) 846 WP_015388017.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29630.11 Da        Isoelectric Point: 6.1630

>NTDB_id=1080610 ACJX3V_RS11705 WP_003153177.1 2426381..2427181(-) (spo0A) [Bacillus amyloliquefaciens strain MEPW12]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=1080610 ACJX3V_RS11705 WP_003153177.1 2426381..2427181(-) (spo0A) [Bacillus amyloliquefaciens strain MEPW12]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCCGATGTGCTCG
TGTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGTGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCATCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCCC
CGTCTGCGCAAAGCAGCATTATCCGCAGCCAGCCGGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAACCAACCAACTCAGAGTTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C7K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97

Multiple sequence alignment