Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ACJX3V_RS10640 Genome accession   NZ_CP176523
Coordinates   2180602..2181210 (+) Length   202 a.a.
NCBI ID   WP_003153521.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MEPW12     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2175602..2186210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJX3V_RS10600 - 2176656..2177162 (-) 507 WP_003153536.1 PTS glucose transporter subunit IIA -
  ACJX3V_RS10605 - 2177301..2177714 (+) 414 WP_003153535.1 hypothetical protein -
  ACJX3V_RS10610 - 2177744..2178178 (-) 435 WP_003153534.1 YppG family protein -
  ACJX3V_RS10615 - 2178364..2178546 (+) 183 WP_003153532.1 YppF family protein -
  ACJX3V_RS10620 - 2178585..2178953 (-) 369 WP_003153529.1 YppE family protein -
  ACJX3V_RS10625 - 2178999..2179244 (-) 246 WP_003153527.1 DUF5446 family protein -
  ACJX3V_RS10630 sspM 2179450..2179554 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  ACJX3V_RS10635 - 2179598..2180560 (-) 963 WP_046559836.1 DUF2515 domain-containing protein -
  ACJX3V_RS10640 recU 2180602..2181210 (+) 609 WP_003153521.1 Holliday junction resolvase RecU Machinery gene
  ACJX3V_RS10645 - 2181249..2184032 (+) 2784 WP_046559837.1 PBP1A family penicillin-binding protein -
  ACJX3V_RS10650 - 2184109..2184600 (-) 492 WP_046559838.1 YpoC family protein -
  ACJX3V_RS10655 nth 2184597..2185256 (-) 660 WP_015388079.1 endonuclease III -
  ACJX3V_RS10660 dnaD 2185275..2185973 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=1080609 ACJX3V_RS10640 WP_003153521.1 2180602..2181210(+) (recU) [Bacillus amyloliquefaciens strain MEPW12]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1080609 ACJX3V_RS10640 WP_003153521.1 2180602..2181210(+) (recU) [Bacillus amyloliquefaciens strain MEPW12]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896

Multiple sequence alignment