Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   ACJX3V_RS07010 Genome accession   NZ_CP176523
Coordinates   1340504..1340968 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus amyloliquefaciens strain MEPW12     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1335504..1345968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJX3V_RS06990 - 1335984..1337804 (+) 1821 WP_003154628.1 PAS domain-containing protein -
  ACJX3V_RS06995 - 1337780..1338999 (-) 1220 Protein_1318 aminotransferase A -
  ACJX3V_RS07000 - 1339200..1339361 (-) 162 WP_007409608.1 hypothetical protein -
  ACJX3V_RS07005 cheV 1339550..1340461 (+) 912 WP_014304917.1 chemotaxis protein CheV -
  ACJX3V_RS07010 kre 1340504..1340968 (-) 465 WP_003154622.1 YkyB family protein Regulator
  ACJX3V_RS07015 - 1341091..1342383 (-) 1293 WP_046559548.1 MFS transporter -
  ACJX3V_RS07020 - 1342459..1342953 (-) 495 WP_088005492.1 L,D-transpeptidase family protein -
  ACJX3V_RS07025 - 1343028..1343891 (-) 864 WP_015388306.1 metallophosphoesterase -
  ACJX3V_RS07030 fadH 1344035..1344799 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  ACJX3V_RS07035 - 1344910..1345458 (+) 549 Protein_1326 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=1080602 ACJX3V_RS07010 WP_003154622.1 1340504..1340968(-) (kre) [Bacillus amyloliquefaciens strain MEPW12]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1080602 ACJX3V_RS07010 WP_003154622.1 1340504..1340968(-) (kre) [Bacillus amyloliquefaciens strain MEPW12]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment