Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACJX3V_RS01750 Genome accession   NZ_CP176523
Coordinates   321302..321739 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MEPW12     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 316302..326739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJX3V_RS01710 - 316882..317046 (-) 165 WP_370648487.1 molybdopterin dinucleotide binding domain-containing protein -
  ACJX3V_RS01715 - 317160..318362 (+) 1203 WP_025853783.1 GTP-binding protein -
  ACJX3V_RS01720 - 318427..319563 (+) 1137 WP_048368274.1 zinc-dependent alcohol dehydrogenase -
  ACJX3V_RS01725 - 319578..320012 (+) 435 WP_021494203.1 RDD family protein -
  ACJX3V_RS01730 - 320129..320404 (+) 276 WP_369719109.1 YckD family protein -
  ACJX3V_RS01735 - 320508..320591 (+) 84 WP_223151977.1 family 1 glycosylhydrolase -
  ACJX3V_RS01740 - 320623..320841 (+) 219 Protein_302 family 1 glycosylhydrolase -
  ACJX3V_RS01745 nin/comJ 320882..321280 (-) 399 WP_043866822.1 competence protein ComJ Regulator
  ACJX3V_RS01750 nucA/comI 321302..321739 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ACJX3V_RS01755 hxlB 322098..322655 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  ACJX3V_RS01760 hxlA 322652..323287 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  ACJX3V_RS01765 - 323519..323881 (+) 363 WP_014304320.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=1080581 ACJX3V_RS01750 WP_003156588.1 321302..321739(-) (nucA/comI) [Bacillus amyloliquefaciens strain MEPW12]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1080581 ACJX3V_RS01750 WP_003156588.1 321302..321739(-) (nucA/comI) [Bacillus amyloliquefaciens strain MEPW12]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCAATAAAAGAAGGGCATTCCAGCATTTGCACCATTGATAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment